Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1652 ATGTCGAAGGCGCGTGTCTACACCGATGTCAATGTCCTTCGCCCCAAGGAGTATTCGGATTACGAGTCTCTCACCCTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAAGTGGGCAGGGGGAAATATAGTGAAGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATTAAGATTCTGAAACCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAATATTTGTGGAGGCCCAAATATTGTTAAGCTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCCAGTTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCATTCTCAAGGCATCATGCATAGGGATGTCAAGCCTCATAATGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTCTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAAGAACCTTTCTTTTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAATTGAATGCATATCTTAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGACACAGTCGAAAGCCCTGGTCTAAATTCATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGGTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGGGCAGCTGAGAGTAGCAGAATGAGGACACAGTAA 1002 0.3992 MSKARVYTDVNVLRPKEYSDYESLTLQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNICGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRVTAREAMAHPYFSQVRAAESSRMRTQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1652 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 333 IPR045216 GO:0004674|GO:0006468
Gso1g1652 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1652 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Gso1g1652 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 333 - -
Gso1g1652 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1652 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Gso1g1652 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1652 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Gso1g1652 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Gso1g1652 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Gso1g1652 333 SUPERFAMILY Protein kinase-like (PK-like) 10 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1652 Gso-Chr1 53158787 53165251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1652 32 319 Core Cell Cycle Gene Families AT1G76540 29.126 1.34e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Gso1g1652 Pkinase 2.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1652 K03097 - gmx:100813528 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1652 1 53158787 53165251 Gso11g0428 11 3780924 3786876 GST
Gso1g1652 1 53158787 53165251 Gso17g1379 17 14588457 14596227 PCT
Gso17g1379 17 14588457 14596227 Gso1g1652 1 53158787 53165251 PCT