Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1644 ATGTTGGAGCTGTGCCGCAAGCCACTGAAGATGTGGTTCGGTGGTGGAGGCAACGACGACGGCCTCCTCTGGCACACAGACCTTAAGCCCCACGCTTCAGGGAACTACTCAATTGCAGTGGTGCAAGCTAATTCATCCTTGGAAGACCAAGCACAAGTATTTACCTCTCCCTCCGCAACCTTTGTTGGTGTATACGACGGTCACGGTGGTCCTGAAGCTTCCCGTTTCATCACCAACCACCTCTTCTCCTTCCTTCGCAAGGAGGGTGGTTTGTCGGAGGAAGTTATAAAGAAGGCGTTCGAGGCAACGGAAGATGAGTTTTTGCGTGTAGTGAGGGAATCATGGATTGCGCGGCCACAGATAGCTTCCGTGGGTTCGTGTTGTCTTCTGGGAGCGATTTCAAAGGGAGTTCTTTATGTTGCTAATCTCGGGGATTCGAGGGCGGTTTTGGGTCGGAAAGCGTTGGAAGGAGAGGTGAATTGTGGTGCTGGTGCTGTGGTGGCAGAGCGTTTGTCCACTGATCATAATGTTGGAGTGGAGAATCTTAGAAAGGAGGTTGAAGCTCTTCACCCTGATGATCCACACATTGTGGTTTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTCTCAAGATCAATAGGAGATGTTTACCTAAAGAAGCCAGAATTTGACACTAATCCTCTGTTCCAACAATTTGTATGTCCACTATACTTGAGGAGACCTGTAATGACAGCTGAACCATCGATATTGGCGCGTAAATTGAAGGCAGATGATCTGTTTTTGATCTTTGCATCAGACGGACTTTGGGAGCATTTAACTGATGAAGCGGCTGTTGAAATCATCTCCAGAAGTCCCAGAATAGGAATTGCAAAACGATTGGCGAGAGCTGCACTAGAAGAGGTTGCAAAGAAAAGAGAAATGAGGTATGGGGATCTAAGGAAAACAGATAAAGGTCTAAGGCGCCATTTTCATGATGATATTACAGTGATCGTTCTATATCTCGATCATTCAAAAGAATCTCAAAATGGTAGATCAAGACGTAAAGGAGTTTATGATTGCATTAATACTCCTATTGATATCTTCTCTGTGAGCTCAGATGAAGCTGATCTTTAA 1122 0.4599 MLELCRKPLKMWFGGGGNDDGLLWHTDLKPHASGNYSIAVVQANSSLEDQAQVFTSPSATFVGVYDGHGGPEASRFITNHLFSFLRKEGGLSEEVIKKAFEATEDEFLRVVRESWIARPQIASVGSCCLLGAISKGVLYVANLGDSRAVLGRKALEGEVNCGAGAVVAERLSTDHNVGVENLRKEVEALHPDDPHIVVCTRGVWRIKGIIQVSRSIGDVYLKKPEFDTNPLFQQFVCPLYLRRPVMTAEPSILARKLKADDLFLIFASDGLWEHLTDEAAVEIISRSPRIGIAKRLARAALEEVAKKREMRYGDLRKTDKGLRRHFHDDITVIVLYLDHSKESQNGRSRRKGVYDCINTPIDIFSVSSDEADL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1644 373 CDD PP2Cc 42 337 IPR001932 -
Gso1g1644 373 SUPERFAMILY PP2C-like 40 339 IPR036457 -
Gso1g1644 373 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 3 372 - -
Gso1g1644 373 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Gso1g1644 373 SMART PP2C_4 28 335 IPR001932 -
Gso1g1644 373 PANTHER ALPHABET, ISOFORM E-RELATED 3 372 - -
Gso1g1644 373 Pfam Protein phosphatase 2C 57 301 IPR001932 -
Gso1g1644 373 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Gso1g1644 373 Gene3D - 26 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1644 Gso-Chr1 53104384 53107870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1644 17 343 PP2C-type Phosphatase Gene Family AT3G51370 52.802 1.93e-132 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1644 - K01102 gmx:100809958 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1644 1 53104384 53107870 Gso11g0436 11 3831519 3835516 GST
Gso1g1644 1 53104384 53107870 Gso20g1046 20 40222282 40225191 PCT
Gso1g1644 1 53104384 53107870 Gso10g2308 10 50110710 50113916 PCT