Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1635 ATGAACACACGAAAAGACATGGACCGGATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAACACGGGCCCAGGAACTGGTCCCTCATCAGCAAGTCCATCCCGGGCCGCTCCGGCAAGTCCTGCAGGCTCCGCTGGTGCAACCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACCCACGAAGAGGACGACACCATTATCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACTGACAACGCCATAAAAAACCACTGGAACTCCACCTTGAAGCGCAAGTGCACTTCAACCATGATTGACGACGACAACACTCCCCCGCTCAAAAGATCCCTCAGTGCCGGCGCTGCTATTCCAGTCTCCACTGGACTCTACATGAACCCTCCCACTCCTGGTAGCCCCTCTGGATCAGATGTGAGTGAGTCCAGCGTACTGGTTGCATCCTCCTCACATGTTTTCCGACCCGTGCCTAGAACAGGCGCGGTTCTACCACCCGTAGAAACAACAACGACTTTGTCTTCCAATGACCCTCCAACCTCACTTTCCCTATCCCTCCCCGGTGTTGACTCATCCGAAGTTTCCAATCGAACAACTGAGCCGATTCATGCCGCACCTCCTCCGCCGCCACAGCCACAGCCACAGCCACAGCCACAGCCGTTGAATACTATCCCTTTGCTCCCAATGATGACGGTGCCCTCGGTTTCTCCGACGGGGATAGCGCCGTTTAATTTTAGCGCAGAGTTTCTGGCGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATGGAGTTGCACAATCAGAAGAATGGGATGTGTTTTCAGGCTGCGGTGAATGATGGGTTTAGGAACGCTTCGGTGAAGCGTATTGGAATTAGCAGGGTTGATTCGTAA 948 0.5591 MNTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTHEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCTSTMIDDDNTPPLKRSLSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSVLVASSSHVFRPVPRTGAVLPPVETTTTLSSNDPPTSLSLSLPGVDSSEVSNRTTEPIHAAPPPPPQPQPQPQPQPLNTIPLLPMMTVPSVSPTGIAPFNFSAEFLAVMQEMIRKEVRSYMELHNQKNGMCFQAAVNDGFRNASVKRIGISRVDS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1635 315 CDD SANT 65 108 IPR001005 -
Gso1g1635 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Gso1g1635 315 SMART sant 10 59 IPR001005 -
Gso1g1635 315 SMART sant 62 110 IPR001005 -
Gso1g1635 315 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Gso1g1635 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 112 IPR017930 -
Gso1g1635 315 MobiDBLite consensus disorder prediction 218 239 - -
Gso1g1635 315 Gene3D - 10 62 - -
Gso1g1635 315 PANTHER MYB TRANSCRIPTION FACTOR 3 284 - -
Gso1g1635 315 Gene3D - 64 128 - -
Gso1g1635 315 MobiDBLite consensus disorder prediction 173 240 - -
Gso1g1635 315 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Gso1g1635 315 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Gso1g1635 315 CDD SANT 13 55 IPR001005 -
Gso1g1635 315 MobiDBLite consensus disorder prediction 181 215 - -
Gso1g1635 315 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Gso1g1635 315 PANTHER MYB PROTEIN-RELATED 3 284 - -
Gso1g1635 315 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1635 Gso-Chr1 53013496 53014888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1635 3 314 MYB Transcription Factor Family AT4G37260 51.775 9.66e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g1635 Myb_DNA-binding 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1635 K09422 - gmx:780556 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1635 1 53013496 53014888 Gso11g0446 11 3939375 3940940 GST
Gso5g0856 5 27987746 27989421 Gso1g1635 1 53013496 53014888 PCT
Gso17g1417 17 15289172 15290720 Gso1g1635 1 53013496 53014888 PCT