Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1631 ATGCCTCAACCACATTCTCCCTCTTTCCTCCTCTGTCAACAACACTACTCTTTCTCTTTCCAACAACATTCTCAAACTCTCACCCCACCTTCACCTTTCACTTTTCCCGACAACCACCAACACGACCACCTTCTCTCTCTACTCTCCAAACAGCGCGCCACGCATTCCTCTTTCTCCCCTCGCCACGACGTCGTTCGTTGGATTTCCACAGTCTCCGACTTCCACGCCTTCGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCGACAGGTTCGTCACCACCCTAAGGTTTCAGAGCGAACAAAAACCATGGATGACTCACCTGGCAGCACTTGCTTGCGTCTCTCTCGCCGCCAAAGTGGAGGAGACACGAGTGCCACTTCTTTTTGACTTCCAAGTGGGGGAATCGAAATTCTTGTTTGAAGCAAAGACTATACAGAAAATGGAGCTCCTAGTGTTGTCCACTCTCGAATGGAAAATGAACCCTGTCACCCCAATTTCTTTCTTCCAACACTTCCTCGCTAGGCTTGGTTTAAAGCGCCACTTGCATTCGGAGTTTCTGTGTAGGTGCCAACGTCTTCTTCTCTCTGTCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTACACTGGCTGCTGCTATAACGATCCACATTATTAAAGAGATTGAACCATTGAATGCTACGGAGTACCAAAATCAGCTTCCTGGTTTACTTAAAACTAGTGAGGAACAAGTGAATGAGTGCTACAAACTGATGCTGGGACTTTACGTTTCCAGCAACGGCATTCACAATTTGAGGCGCAAGCGTTTGTCCGAACCTAGTAGTAGCCCAGATGGGGTCATTGATGCATCTTTCAGTTGTGACAGTTCAAATGATTCATGGACTGTTGCATCACCTTCAGTTGAGCCAGTGTTTAAGAGGAGAAAACCTCAGGACCAGCAGATGCGGTTGCCTTCAGTGAATCGAGTGGTTATTGATGTTCTAAATACTCCTCGTTAA 1005 0.4716 MPQPHSPSFLLCQQHYSFSFQQHSQTLTPPSPFTFPDNHQHDHLLSLLSKQRATHSSFSPRHDVVRWISTVSDFHAFAPLTTVLAVNYFDRFVTTLRFQSEQKPWMTHLAALACVSLAAKVEETRVPLLFDFQVGESKFLFEAKTIQKMELLVLSTLEWKMNPVTPISFFQHFLARLGLKRHLHSEFLCRCQRLLLSVIADSRVMSYLPSTLAAAITIHIIKEIEPLNATEYQNQLPGLLKTSEEQVNECYKLMLGLYVSSNGIHNLRRKRLSEPSSSPDGVIDASFSCDSSNDSWTVASPSVEPVFKRRKPQDQQMRLPSVNRVVIDVLNTPR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1631 334 Gene3D - 163 252 - -
Gso1g1631 334 SUPERFAMILY Cyclin-like 146 259 IPR036915 -
Gso1g1631 334 PANTHER CYCLIN-D3-2 28 316 - -
Gso1g1631 334 SUPERFAMILY Cyclin-like 41 162 IPR036915 -
Gso1g1631 334 SMART cyclin_7 66 155 IPR013763 -
Gso1g1631 334 SMART cyclin_7 172 256 IPR013763 -
Gso1g1631 334 Pfam Cyclin, C-terminal domain 164 263 IPR004367 -
Gso1g1631 334 Pfam Cyclin, N-terminal domain 48 162 IPR006671 -
Gso1g1631 334 PANTHER CYCLINS 28 316 IPR039361 -
Gso1g1631 334 Gene3D - 57 162 - -
Gso1g1631 334 SMART Cyclin_C_2 164 291 IPR004367 -
Gso1g1631 334 CDD CYCLIN 61 154 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1631 Gso-Chr1 52979225 52981407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1631 42 324 Core Cell Cycle Gene Families AT5G67260 48.845 3.49e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1631 K14505 - gmx:100802683 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1631 1 52979225 52981407 Gso11g0451 11 3991134 3993275 GST
Gso1g1631 1 52979225 52981407 Gso20g1011 20 39883370 39886042 PCT
Gso1g1631 1 52979225 52981407 Gso10g2345 10 50384749 50387037 PCT
Gso5g0849 5 27502647 27504520 Gso1g1631 1 52979225 52981407 PCT
Gso17g1420 17 15457021 15458936 Gso1g1631 1 52979225 52981407 PCT