Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1629 ATGGAACCAGCTTCAGCTGATTCTTCATCTCAACCTACTCCTCCAGCTTCTAATACTGAAGAACAACACTCAACCAAAGTGTCTGGACAACCTGGCAATGCACATGATTCGCAATTGTCGTCACCCACTTCTGGCATATCATCCTGGGCAAGAAATCTGAAATTCCCACAGGCCCTTGGGCTTGGAGCACAACAGAACTCCCAGACCGAAAATGCTGGCATGTCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCGAACGCCATCAAATGAAACTGCTCCAGTCAAGTCAGGAGCCGAGCAATCTAACTTGATTGAATCCGTCACCAAAGGGTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCAGTGCAGGTCAAAGCACGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGGTGGATTTGATTTGGACATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGATGAAGTGATCAAGTTTTTTGAAACGCATCATAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGACGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTCGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAGTCTTCTTTTGTTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTTTAGTCCTCCCTAGTCAGATTAGATATGTAAAATACTTTGAACGGACTTTAACACACTTCAATGGAGAAGTCCAACCAGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATACGGGAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGTACCAAAGAAAGGAATTGTGGTTTTTGCCCTACCAGGAGAGCCTGGTCTAGCAGAGTTGGTAGGAGACTTCAAAATTCAGTTTCAAGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACGATGACAGAAAACCGAAAATTTTTGGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAGATCCCTGCTCCAGGATTCAAGGTGGAAGTTGTGATGATAGACTATAATGGCACCCTACCTGCAAATACAAAATCAAATCCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCCAAAGTCTACTACATCTAATTCAAGTGAGAGTAAAGTCCCTAGAAACGGAGATGATGATGTATTCTCAGACAGCGACGAAGAGGAGACCCGGGATACACAAAGCAATAAAGCTGCAGCTGAGTACAAATTTATGGCACCTCATCAAGTATCTGAGGCAACAAATGACCATGTAGGGATGTTGACACAGAAAACGGATCAGTTGTCACTGCAGCATGAGGGATGCAAGCAAAACGATGCTTCTGAAGAATCACCTACAGATAAACTTCATAAAAATCATACAGGCAATAAGAGTACAAACATGGGATCTGTAGGGGCAAGTGACATCAAGGCAATCGCAGCAGATGCTTCAGTTTTTTCCTTTGGAGATGAAGATTTTGACAGTGATTGA 1821 0.4212 MEPASADSSSQPTPPASNTEEQHSTKVSGQPGNAHDSQLSSPTSGISSWARNLKFPQALGLGAQQNSQTENAGMSAFARLTGGLGLRTPSNETAPVKSGAEQSNLIESVTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMDEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHTGILFTTRKHPKTKDLMPEDFWISVPKKGIVVFALPGEPGLAELVGDFKIQFQDRQGDFYCWMNTTMTENRKFLDGSDFDGFDKRKIPAPGFKVEVVMIDYNGTLPANTKSNPASKGSDGNTSNALPGPKSTTSNSSESKVPRNGDDDVFSDSDEEETRDTQSNKAAAEYKFMAPHQVSEATNDHVGMLTQKTDQLSLQHEGCKQNDASEESPTDKLHKNHTGNKSTNMGSVGASDIKAIAADASVFSFGDEDFDSD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1629 606 SMART PTEN_C2_2 321 449 IPR014020 -
Gso1g1629 606 ProSiteProfiles C2 tensin-type domain profile. 323 450 IPR014020 -
Gso1g1629 606 MobiDBLite consensus disorder prediction 455 489 - -
Gso1g1629 606 MobiDBLite consensus disorder prediction 545 580 - -
Gso1g1629 606 MobiDBLite consensus disorder prediction 1 48 - -
Gso1g1629 606 MobiDBLite consensus disorder prediction 86 102 - -
Gso1g1629 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 251 290 IPR000387 GO:0016311|GO:0016791
Gso1g1629 606 CDD PTP_PTEN 147 311 IPR045101 GO:0016791
Gso1g1629 606 MobiDBLite consensus disorder prediction 455 512 - -
Gso1g1629 606 MobiDBLite consensus disorder prediction 83 102 - -
Gso1g1629 606 MobiDBLite consensus disorder prediction 553 571 - -
Gso1g1629 606 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 11 606 - -
Gso1g1629 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 253 263 IPR016130 GO:0016311|GO:0016791
Gso1g1629 606 Gene3D Protein tyrosine phosphatase superfamily 122 319 IPR029021 -
Gso1g1629 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 11 606 - -
Gso1g1629 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 316 IPR029021 -
Gso1g1629 606 ProSiteProfiles Phosphatase tensin-type domain profile. 137 316 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1629 Gso-Chr1 52965600 52973292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1629 37 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.309 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1629 K01110 - gmx:100801622 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1629 1 52965600 52973292 Gso11g0453 11 4000692 4008568 GST
Gso1g1629 1 52965600 52973292 Gso20g1010 20 39869707 39875913 PCT
Gso1g1629 1 52965600 52973292 Gso10g2346 10 50395110 50403511 PCT