Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1625 ATGGCCGTGGAATTCATGATGGGGTACAGGAACGACACTTTCGCGGAGGATAATGCAGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCATACTCAACAACAATACCAGACAACCTCAAAGTCTTCCATGGAAAACATCGACACCGACTACACAGCTGTCGCTGACGTCGCGGTTTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCCGCACCAGAACCGGTCACGCGCGTTTTAGAAGAGCCCCTGTGCCTGTGCCTGTGCCTGTGGCTTCACCTCCACCTTCGGAACCGAGAGTCTACCGTGCTACGCCGCTGCAGCAGATCCCGCCACCCACCCTTCACACTCACTCTGTCACTGAACACTCTCTGATCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAATTCGTTTGTCTCCTCCCTCACCGCTGGCGATACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCGCCGGCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCCGGAAAGCCTCCTCTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGCTCTGAGAACTTGGGTTCTGCTAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAGATGGCTGATATTCCACCAGACGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCCCATCCAAGAGGTTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGCAAACACGTAGAGAGGGCTCTGGATGATCCATCTATGTTGGTAGTCACCTATGAAGGAGAGCACAATCATACACTCTCTGCAGCCGAAGCTACTAATCTCATCCTAGAATCCTCTTAA 963 0.513 MAVEFMMGYRNDTFAEDNAVREAASGLESVEKLIKLLSHTQQQYQTTSKSSMENIDTDYTAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPVPVPVASPPPSEPRVYRATPLQQIPPPTLHTHSVTEHSLIPKIERKDSSKTINFSYSNSFVSSLTAGDTDTKQPCSSSPSPATAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKRKMRQKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1625 320 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1625 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 320 IPR044810 GO:0003700
Gso1g1625 320 Gene3D WRKY domain 232 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1625 320 Pfam Plant zinc cluster domain 200 245 IPR018872 -
Gso1g1625 320 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1625 320 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 320 - -
Gso1g1625 320 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1625 320 MobiDBLite consensus disorder prediction 187 212 - -
Gso1g1625 320 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1625 Gso-Chr1 52933084 52935024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1625 1 305 WRKY Transcription Factor Family AT2G24570 44.179 4.92e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g1625 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1625 - - gmx:100804089 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1625 1 52933084 52935024 Gso11g0456 11 4031654 4033329 GST
Gso1g1625 1 52933084 52935024 Gso13g0738 13 21668752 21670390 PCT
Gso1g1625 1 52933084 52935024 Gso17g0479 17 4331943 4333609 PCT
Gso5g0840 5 27063748 27065918 Gso1g1625 1 52933084 52935024 PCT
Gso17g1426 17 15607512 15609619 Gso1g1625 1 52933084 52935024 PCT