Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1621 ATGGAGAGTGAAGGAAGAAGAGAAGGAGGAGAGAGAGAAACAACAGCAGCGACGAGGAAGGTGGAGGGTGCTGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAACCCAATAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCTACCCCTGTCGCCGCCGCACGTGCCTACGACACGGCCGTCTTTTACCTCCGGGGACCCTCCGCACGCCTCAACTTCCCGGAGCTTCTCGTCAGAGAAGGCCCGGCCGCCCTAGTCGCCGGCTGCGACATGTCAGCGGCTTCTATTAGGAAGAAGGCCACCGAGGTCGGTGCTAGAGTCGATGCTCTTCAGGCAACCCTTCACCACCACTACGTGCCCCCGCGGCAACTTCTCTCTGGCGGTGGTGGTGGGTCCGGGGATTTCCCGGTGCGGGTTGTTGACCTGAATAAGATGCCTGAACCCGAGAGTTCGGACTGTGAGTGGGATGTGAATTGA 507 0.574 MESEGRREGGERETTAATRKVEGAERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLVREGPAALVAGCDMSAASIRKKATEVGARVDALQATLHHHYVPPRQLLSGGGGGSGDFPVRVVDLNKMPEPESSDCEWDVN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1621 168 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Gso1g1621 168 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Gso1g1621 168 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Gso1g1621 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 162 - -
Gso1g1621 168 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Gso1g1621 168 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Gso1g1621 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 12 162 - -
Gso1g1621 168 Coils Coil 168 168 - -
Gso1g1621 168 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Gso1g1621 168 MobiDBLite consensus disorder prediction 1 22 - -
Gso1g1621 168 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Gso1g1621 168 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1621 Gso-Chr1 52890576 52891560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1621 25 162 AP2-EREBP Transcription Factor Family AT3G50260 64.493 3.66e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso1g1621 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1621 K09286 - gmx:100527066 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1621 1 52890576 52891560 Gso11g0461 11 4064281 4065298 GST
Gso1g1621 1 52890576 52891560 Gso17g1434 17 15823152 15824010 PCT
Gso17g1434 17 15823152 15824010 Gso1g1621 1 52890576 52891560 PCT