Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1619 ATGTGGGATCTGAATGACTCCCCCGATCAGAGAAAGGACTACGAGTCTGAAGGCTGTTCTTCTTCTCTGTATGATGATAAAGGCAAGAGGGTGGCATCTGTTTCCAATTCAAGCTCCTCTGCGGTGGTCGTTGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGGAAGCAGAACATTGGATAACAAGAAAACCAACAAAATATTCGGCTTCTCTGTAGCTCATGATGACAGTGACCACCCACCCGTCACTCATCAGTTTTTTCCGGTTGAGGACTCCGAACTTCCAGTCACCGCTGCCGCCGCCGCGGCCGGAAGCTCCTTCCCACGTGCTCACTGGGTAGGCGTCAAATTTTGTCAATCGGAAACACCCGGCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGCCGCCGAGGACCACGCTCGCGCAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGAACCGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTATATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGATGACCAATTTAACTAAGGAGGAGTTTGTGCATGTACTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCATAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTATGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATGAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGTAATTTGATCTCTAAACATAGCAATAGTCAATCATCGAGGAATCACTTCCCAAATTCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCAGAGTGGGGGAAGCAAGCCTAAGGTTCATCTGGTTAATATACTTCCAAAACCATGTGGTAGAAGCAACATGGAAGCCTATGGGCAAGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCAACCACTAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCAGCAGAGCCACAAATGCCTCACAATTTCGCACATCATCTTCACCAACCAAGTTTTCATGTTCCTAGCAGCAGCAGCAACCGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAACAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCATGA 1494 0.4732 MWDLNDSPDQRKDYESEGCSSSLYDDKGKRVASVSNSSSSAVVVEDGSEEEDSERGGSRTLDNKKTNKIFGFSVAHDDSDHPPVTHQFFPVEDSELPVTAAAAAAGSSFPRAHWVGVKFCQSETPGAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDESSGGVAADHNLDLSLGNLISKHSNSQSSRNHFPNSATDQHMPPESNWQSGGSKPKVHLVNILPKPCGRSNMEAYGQGESETLRLLSQTHLQSPTTKEMHRYGPYRSPAEPQMPHNFAHHLHQPSFHVPSSSSNRGRIGSDLSLSMSDQQQWQQAGPPHLLATAAASSGFPQQIRPSQGWLQKNGFHSLMRPS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1619 497 MobiDBLite consensus disorder prediction 325 358 - -
Gso1g1619 497 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Gso1g1619 497 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 495 - -
Gso1g1619 497 MobiDBLite consensus disorder prediction 429 460 - -
Gso1g1619 497 MobiDBLite consensus disorder prediction 426 460 - -
Gso1g1619 497 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Gso1g1619 497 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Gso1g1619 497 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 MobiDBLite consensus disorder prediction 1 24 - -
Gso1g1619 497 MobiDBLite consensus disorder prediction 128 150 - -
Gso1g1619 497 CDD AP2 150 207 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 495 - -
Gso1g1619 497 MobiDBLite consensus disorder prediction 1 64 - -
Gso1g1619 497 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 Pfam AP2 domain 241 290 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Gso1g1619 497 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Gso1g1619 497 MobiDBLite consensus disorder prediction 325 359 - -
Gso1g1619 497 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1619 Gso-Chr1 52856504 52860158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1619 1 334 AP2-EREBP Transcription Factor Family AT4G36920 68.272 2.83e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso1g1619 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1619 K09284 - gmx:100801975 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1619 1 52856504 52860158 Gso11g0463 11 4083474 4087107 GST
Gso1g1619 1 52856504 52860158 Gso17g1438 17 15953876 15958016 PCT
Gso17g1438 17 15953876 15958016 Gso1g1619 1 52856504 52860158 PCT