Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1612 ATGGGTGACATGTACCACTTTGACAAGAACCTCTCTTCGCAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTCCACCTTCTTCTTCTTCATCTTCCCGCCCCATGCCTACTGTATCCTGCACCTCTAACGTTGCTCACCAAAACGTAAATGCACACCCTTCTTTCACAGCGTCGCAGCTCCAAGATGGGAAGATCTTGGCCCTTGATTCCACCGCTTCTTTTGCCTCGGGTTCTGCTGCTTGCAGCTCCTTCAAGGGCCAGGGTGCTTCTGCTGCAAATGTGTCTTCTTCGTCTGCTGGAGTGAGTGAGAACGAAAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTTGAGGCTTTGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCTGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGATGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTCTACCCCTTTAAACATGTCAGCTACTCTGCCTCTGCATCAAGACAACAACCCCTTGCACTATGCATCCAATCAGCCATGTGTGCCCTATCCTCCATACATTAACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAACCGGATACGAAACCTCTTCAACACAAAGAAGGATCTTCTGAGCCAATACGCGGGAAAGACATTCTGCAGTACCAGCAATCAAGTGCTATCCATTCAGATACCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGATTCAGGCACGACACTATCGTTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAACTCTTTGCAACCATGCATCGGCGGAAGAGATCATTCAGGAGTGATGATAAGAAATAGTGAGACCAACATTATTGGTAGGTAA 1062 0.4567 MGDMYHFDKNLSSQDEISLFLRQILLRSSPPSSSSSSRPMPTVSCTSNVAHQNVNAHPSFTASQLQDGKILALDSTASFASGSAACSSFKGQGASAANVSSSSAGVSENENDDYDCESEEGVEALAEEVPTKAASSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKMLSMRNGLSLHPMCFPDGLQPLQLSQMGMELSERNRSTPLNMSATLPLHQDNNPLHYASNQPCVPYPPYINNPETSFGLEPRIQPDTKPLQHKEGSSEPIRGKDILQYQQSSAIHSDTNTLGGSQVVKEFDSGTTLSFPFDTQACEPKDNNSLQPCIGGRDHSGVMIRNSETNIIGR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1612 353 Gene3D - 122 189 IPR036638 GO:0046983
Gso1g1612 353 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 177 IPR031066 -
Gso1g1612 353 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 176 294 IPR031066 -
Gso1g1612 353 MobiDBLite consensus disorder prediction 252 277 - -
Gso1g1612 353 MobiDBLite consensus disorder prediction 262 276 - -
Gso1g1612 353 PANTHER TRANSCRIPTION FACTOR SPATULA 12 177 - -
Gso1g1612 353 PANTHER TRANSCRIPTION FACTOR SPATULA 176 294 - -
Gso1g1612 353 MobiDBLite consensus disorder prediction 97 156 - -
Gso1g1612 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 177 IPR036638 GO:0046983
Gso1g1612 353 MobiDBLite consensus disorder prediction 110 124 - -
Gso1g1612 353 MobiDBLite consensus disorder prediction 142 156 - -
Gso1g1612 353 Pfam Helix-loop-helix DNA-binding domain 148 185 IPR011598 GO:0046983
Gso1g1612 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1612 Gso-Chr1 52787186 52790534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1612 5 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 38.710 6.15e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1612 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1612 - - gmx:100797351 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1612 1 52787186 52790534 Gso11g0470 11 4148941 4152363 GST
Gso1g1612 1 52787186 52790534 Gso17g1463 17 17501283 17504937 PCT
Gso17g1463 17 17501283 17504937 Gso1g1612 1 52787186 52790534 PCT