Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1610 ATGGCGGATGATGAGCCAGTAAGCGGAAGGCGAAGGCCGAGGGGACCGGAGGCCACCGAACGCAGCAAAGCCTTGGAGCGTCTCAAGGCCCGCATCCACGGCGGTCGTCGATCCGACGCCACCGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACCGTCCCTGAGGACGAGTACAACGCCCTCGTCGCCAAGCGCCGCGAACAGGCTCGGTCCTTCATCGTCGACGATGAAGGACTCGGCTACGGCGACGAGGGCGAGGAAGAGGACTGGTCGCAGGCCGGATTCAACCTCTCCTCCGGCGAATCCGAAGACGAATCGGAGAGGCCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGACCTTCTTCCTCGCTCTCCGCCGCCGCCGCCATGATGGGAGGCCAGAGGCTGTCGTCGATGTTCACTTCGTCTGTTTTCAAGAAGAGCAGAGACGACAAGGCCTCCGAGAGCATCGTCGATGATGTTATCGCGGAGTTTGCGGCGGACGAGACCGATAGACTGAGGCGTAAAAGGGCTAATGTGAATTCCTCCTCCTCTTCGGTTACAAATGATGCTTTGCGGATTAACAACACGGTTAGGGATAAGCCTTCTGTTGATTTGATTGGAGCTTCTTCGCTGCCGGCAAATGGTAATGCTGAGTCTGTTAAGGTTGTTGACAGTGATGGTTCTGACTCGGGGTTTGAGCAAAAGAGTGAGGCGGTTAGTGAAATTGAAGATTTGGCGTGTGTAAGTTCTGAGAATGGACAGGCGCCAGTGGTGGAATCTGATGATTGTAAAATTAATGAGGGTATAGTTGAGGCGAAAGAGATGAAGAAAGCTGAAATTGAAGTAAAATCGGGTGGGAAAAAGGAGGTGTTCACTTTGAATGCGAAGGTTAAAGAGGAGGACGAGGAGGACCCGTCATTGTCTGCAACTGCTGGTTGGAAGGAAGTGATGAGTGGTGCCGGTGGTGTTGATGCTGATTCAAAGGATGCTTTGCAGAACCAACAACACTCAGAGTTAGATTTGGAGAAAGATGGATCATTTTTTTTCTATATACTAGATGCATATGAGGAGTTTTATGGAGAAAATAGGGGCACCCTTTATCTGTTTGGGAAGGTCAAAACTGGGGATTTGTATCAGAGTTGCTGTATTATTGTGAAGAACATGCAGAGGTGCATCTATGCAGTTCCAAGCCTATCTCTGCATCGCACAGAAGAGATGATGAGTCTTGAGAGAGATGTCCAAGAGTCTCGAATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAAGATGCAGTATCTGATGTTAAGAATGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAACTTTAGCATGGCTCCTGTTAAGAGGAAATACGCATTTGAACGGTCTGAAATTCCTGCAGGTGAAAATTATGTGGTGAAAATCAATTATTCATTCAAGGATCCAGTACTCCCTGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCGCTTGAGCTTTTTTTGATTAAAAGAAAGATAAAGGGTCCTTCATGGCTACAGGTTTCAAACTTTTCTCCAAGCTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAACAAATAAATTCAGCTCCAAAGATCACTTCTAAGATTCCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACCATCATAAATGAAAAACAGAACATAAATGAGATTGTATCAGCATCTGTTGTCTGTTGCAACATGGTTAAGATTGACACTCCTATGATGGCTTCAGAGTGGAGGAGACCTGAAAGGCTGACCCGTTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGGTTCAACAAGGAGGTTACGGACAGAAACTTACAAGCGGGTTCAAATATTCTGTGTGCTGAGAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAATTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCCTGCATTGCTGGCCGACTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTAAACAAGATTCGGACGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTAATGAAGCTTATTGAATACGGTGAAACAGATGCATGGCTGTCTATGGAACTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATTTATGGTGCCAGACAAGTTCTCATACCATGCAAAAGAAACAAAAGAAACAAAATTGATGAAACGCAGGTTAACTCATGATGTGGAGGATAACAACTTTGATGCATATATTGATGATGCAAACCATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAGAATGAAAAAAATAAGAATGAAAAGACTGATCCTATTAGAGTTCAGCAACTGGATATTCAGCAGCAAGCACTCAAGCTTACTGCAAACAGTATGTATGGGTGCCTGGGATTTTCGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAAGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAGGTCAATAAGAAGTATAAATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTGCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTATAAGGATGGCACCCCATATGAGGCTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCATATTAGCTAAAGAACTAGGAGATTTTTGCTTGACTCAAATTTTATCGGGAGGGTCATGCGAAGATGTTGTGGAGTCAATCCACAACTCACTAATGAAGGTACAAGAAGAAATGAGAAACGGACAGGTAGCATTAGAGAAATATGTCATTACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGCTACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTCCAGGCAGTGCAGCTGGCATTGCTCAACGTGCCAGACATCCTGATGAACTTAAACGAGATCAAGGGACCTGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCTGTGGTATCACGTCTTTGTGCACCAATTCAGGGCACAAGCCCAGAAAGACTAGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTGCAAGCCCACTCTCGTTTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCTAGCTGCTCTGGTACATTTGACTGCCCACCTGTTTTTAAATCTATTTGTTTGTTGGGAAGTGAAAGGCAAAGGCCAACCAGTGTAGCCCCAGAGGAAGCTGAGTACAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGATGTTAAAATTTCTCCTGTAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTATTTTAATGTACTACAGAGGTTTACTAGTGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGCAATGGGCGTCTAGTTAGAAAGTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAGATGGAGGCAAAATCTAGAATACCGATAGAGAAAGAGTTGATAAAAATTAGGGCGGTGATTAAATCGGCAGCATCAACAGCACAGGAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAATTGGAGAATCTGGTCATTTCAGTTTAA 4635 0.436 MADDEPVSGRRRPRGPEATERSKALERLKARIHGGRRSDATGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSSGESEDESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKASESIVDDVIAEFAADETDRLRRKRANVNSSSSSVTNDALRINNTVRDKPSVDLIGASSLPANGNAESVKVVDSDGSDSGFEQKSEAVSEIEDLACVSSENGQAPVVESDDCKINEGIVEAKEMKKAEIEVKSGGKKEVFTLNAKVKEEDEEDPSLSATAGWKEVMSGAGGVDADSKDALQNQQHSELDLEKDGSFFFYILDAYEEFYGENRGTLYLFGKVKTGDLYQSCCIIVKNMQRCIYAVPSLSLHRTEEMMSLERDVQESRISSADFFKKLQDAVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSNFSPSSASRRVSWCKFEVTVDSPKQINSAPKITSKIPPVVVAAINLKTIINEKQNINEIVSASVVCCNMVKIDTPMMASEWRRPERLTRFTVVRKLDGSIFPMGFNKEVTDRNLQAGSNILCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKIRTEVAPHEVPKMFQTAESLMKLIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKFMVPDKFSYHAKETKETKLMKRRLTHDVEDNNFDAYIDDANHDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDESFPRLPSSKTTGVLPEVLKNLVDRRKMVKSWIKNEKNKNEKTDPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDEIEEANKIAVRVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLYKDGTPYEAIERKGLDIVRRDWSILAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSPGSAAGIAQRARHPDELKRDQGTWLIDIDYYLSQQIHPVVSRLCAPIQGTSPERLADCLGLDSSKFHHKSSEALNDDSASPLSFVADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLGSERQRPTSVAPEEAEYNFWRKLCCPKCPDVKISPVMIANQVKRQAERFILMYYRGLLVCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRIPIEKELIKIRAVIKSAASTAQEIRDRCAFGWVKLENLVISV* 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1610 1544 Gene3D - 396 522 - -
Gso1g1610 1544 CDD POLBc_alpha 903 1313 IPR045846 GO:0003887|GO:1902975
Gso1g1610 1544 Pfam DNA polymerase family B, exonuclease domain 386 759 IPR006133 -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 179 202 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 75 138 - -
Gso1g1610 1544 SUPERFAMILY DNA/RNA polymerases 901 1313 IPR043502 -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 103 124 - -
Gso1g1610 1544 Gene3D DNA Polymerase alpha, zinc finger 1337 1530 IPR038256 -
Gso1g1610 1544 ProSitePatterns DNA polymerase family B signature. 1065 1073 IPR017964 GO:0000166|GO:0003676
Gso1g1610 1544 MobiDBLite consensus disorder prediction 891 910 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 891 905 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 1 36 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 224 243 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 185 202 - -
Gso1g1610 1544 Pfam DNA Polymerase alpha zinc finger 1338 1540 IPR015088 GO:0003887|GO:0006260
Gso1g1610 1544 PRINTS DNA-directed DNA-polymerase family B signature 927 940 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso1g1610 1544 PRINTS DNA-directed DNA-polymerase family B signature 1010 1022 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso1g1610 1544 PRINTS DNA-directed DNA-polymerase family B signature 1063 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso1g1610 1544 SUPERFAMILY Ribonuclease H-like 457 847 IPR012337 -
Gso1g1610 1544 Pfam DNA polymerase family B 825 1298 IPR006134 GO:0000166|GO:0003677
Gso1g1610 1544 Coils Coil 1077 1111 - -
Gso1g1610 1544 SMART polmehr3 567 1077 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gso1g1610 1544 CDD DNA_polB_alpha_exo 567 817 - -
Gso1g1610 1544 Gene3D - 1141 1328 IPR042087 -
Gso1g1610 1544 Gene3D - 356 555 - -
Gso1g1610 1544 MobiDBLite consensus disorder prediction 1 50 - -
Gso1g1610 1544 Gene3D - 567 879 IPR036397 GO:0003676
Gso1g1610 1544 Gene3D Helix hairpin bin 968 1023 - -
Gso1g1610 1544 Gene3D Palm domain of DNA polymerase 896 1126 IPR023211 -
Gso1g1610 1544 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Gso1g1610 1544 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1543 - -
Gso1g1610 1544 TIGRFAM pol2: DNA polymerase (pol2) 51 1295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1610 Gso-Chr1 52764948 52778584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1610 2 1542 Core DNA Replication Machinery Family AT5G67100 59.257 0.0 1806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1610 K02320 - gmx:100798779 2997.99