Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1609 ATGAATAGTTCCACCAGTGCCGCTGCAGCAATGAACGACCAGCTCTCCAACCCCACCTCCATCTTCGGCCTCCGCCTATGGGTGGTTCTCGGCGTCTGCGTTGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGTTAGCCTTCAAGCGCTCCAAAACCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATCAGGCTCGACCACGCGCCCAACCTCAACCCCACTCTCCAACCCGAACCTCCTTTATCCGAACCTGACCCCGTTCCTCCCACCGAAGAGGAAACCACCCCCCTCGGCTACCACCGAATCCAGTTCGAGATTGGCAAGAACCACCGAATCTCTTACCCCGAACGTCCCTTGGTTCGCTCCAGCTCCAATGACCCCAGCAGCTGCGAGGTTCAGGTTCCCACCGTCATTCCAGAAGTTTCTCACTTAGGTTGGGGCCACTGGTACACTCTCAGGGAGCTTGAAGATTCCACTAACGCCTTCGCCCCTGAGAATGTTATTGGCGAAGGTGGATACGGAATTGTTTATCACGGTATCCTCAACGACAATACTAATGTTGCTATTAAAAATTTGCTCAATAATAGGGGCCAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCTATAGGACGTGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTACGTTGACAATGGTAATTTAGAGCAGTGGCTGCATGGGGATGTTGGGCCTTGCAGTCCTCTAACTTGGGAAATTCGAATGAACATTATTCTGGGAACGGCTAAAGGGTTAACTTATCTTCATGAGGGGTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTTTGCTTAGTAAGCAGTGGAATGCGAAGGTGTCAGACTTTGGACTCGCCAAACTCCTTGGCTCCGACAACAGCTATATTACAACCCGTGTCATGGGTACATTTGGATATGTTGCTCCTGAATACGCAAGTACTGGCATGTTGAATGAACGGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAACTAATTACAGGAAGGAATCCAGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTAGTAGACTGGCTCAAGAAGATGGTTAGCAACAGAAATCCAGAGGGGGTGCTGGATCCCAAGCTTCCTGAGAAACCAACCTCAAGGGCACTAAAACGAGCCCTTCTTGTAGCCTTACGCTGCACTGATCCTAATGCACAAAAACGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCCGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAAAAGGGATGCAGGACATTCACCTAATGATAGAGTAGGGGATGGGTTGAAAGAGGAGGTAACTGTGTCTGTGTCAGTTGATGATGGTAAGCTTGAAAATGGGGTGTGTGCCAATGAGACAAGATCGAACCTTCAAATAGAAAAGCAATAA 1512 0.4821 MNSSTSAAAAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWLAFKRSKTNPVSIPDVSKEIQEIRLDHAPNLNPTLQPEPPLSEPDPVPPTEEETTPLGYHRIQFEIGKNHRISYPERPLVRSSSNDPSSCEVQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTNVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPCSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMELITGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRAKRDAGHSPNDRVGDGLKEEVTVSVSVDDGKLENGVCANETRSNLQIEKQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1609 503 SUPERFAMILY Protein kinase-like (PK-like) 147 442 IPR011009 -
Gso1g1609 503 PANTHER OS01G0323000 PROTEIN 6 493 - -
Gso1g1609 503 CDD STKc_IRAK 176 442 - -
Gso1g1609 503 PANTHER RECEPTOR-LIKE KINASE PLANT 6 493 - -
Gso1g1609 503 MobiDBLite consensus disorder prediction 442 479 - -
Gso1g1609 503 MobiDBLite consensus disorder prediction 77 102 - -
Gso1g1609 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Gso1g1609 503 Gene3D Phosphorylase Kinase; domain 1 148 245 - -
Gso1g1609 503 Pfam Protein kinase domain 173 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1609 503 SMART serkin_6 170 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1609 503 ProSiteProfiles Protein kinase domain profile. 170 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1609 503 Coils Coil 190 210 - -
Gso1g1609 503 MobiDBLite consensus disorder prediction 442 503 - -
Gso1g1609 503 MobiDBLite consensus disorder prediction 81 99 - -
Gso1g1609 503 Gene3D Transferase(Phosphotransferase) domain 1 246 459 - -
Gso1g1609 503 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1609 Gso-Chr1 52757141 52760156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1609 147 444 Trihelix Transcription Factor Family AT1G70460 46.865 6.06e-88 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso1g1609 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1609 - - gmx:100797726 985.711