Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1605 ATGATTTGGGTTCGCGGAGACTCTCTCGGCACTGGCAGCTTCGCCACTGTCAACATAGCCATACCCACAAATACTTCCATTCATTTTCCTTCTCCCACCGCCGTCAAATCCTCCGATGTTCTCTCCTCGTCTATGCTGAAAAACGAGAAGGAGATACTCGATTGCCTTGGAGCTTCCCCTTATGTCATCAAATGTTTCGGCCATGATCACACTATTGAAAACGGAGAAGAGTATTACAACATTTTCCTCGAATACGCCGCCGGTGGTTCTCTCGCCGATCAGGTCAAAAGACACGGCGGGAGGCTTCCGGAGTCTTACGTTCGGAGGTGTACGAGGTCGATCGTCGAAGGTCTAAAACATATTCACGACAACGGTTATGTTCACTGCGATGTGAAGCTTCAAAACATTCTCGTTTTTGAGAATGGGGATGTTAAGATCGCCGATTTTGGGCTCGCGAAGGAGAAAGGGGAGAAACAGGGGACGTTTGAGTGCAGGGGGACGCCGTTGTTTATGTCGCCGGAATCTGTGAACGACAATGAGTACGAGTCGCCGGCGGATATTTGGGCTTTGGGCTGCGCAGTCGTGGAGATGCTGACCGGAAAACCCGCGTGGGATGTTCGCGGATCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCCAAGATTCCAGAAGAGTTATCAGAAGAGGGAAAAGATTTTCTTTTGAAATGTTTCGTTAAGGATCCAATGAAGAGGTGGAGCGCTGAGATGCTTTTGCATCACCCTTTCGTTAACAATGAAACGGTTTCTTTTCACAAAGTTAATGAGCCGTTGCCGTTACCGTCTCCGTCACCGAGGACACACTTTGATTTAACTCACTGGGCTTCCACCGTAACGACGTGGCTTCCGTCTTCCCCTGATTCTGATGAGTGGCGTATGGCGGAATTCGGGTCCTCGTGTTCGCCGGAGAATCGGTTTCGGCGGCTGCTCACCGATCAGACGCCGGCGAATTGGTCAGAATCGGATGGCTGGACAAGCGTTAGGTGA 1041 0.5024 MIWVRGDSLGTGSFATVNIAIPTNTSIHFPSPTAVKSSDVLSSSMLKNEKEILDCLGASPYVIKCFGHDHTIENGEEYYNIFLEYAAGGSLADQVKRHGGRLPESYVRRCTRSIVEGLKHIHDNGYVHCDVKLQNILVFENGDVKIADFGLAKEKGEKQGTFECRGTPLFMSPESVNDNEYESPADIWALGCAVVEMLTGKPAWDVRGSNIWSLLIRIGVGEELPKIPEELSEEGKDFLLKCFVKDPMKRWSAEMLLHHPFVNNETVSFHKVNEPLPLPSPSPRTHFDLTHWASTVTTWLPSSPDSDEWRMAEFGSSCSPENRFRRLLTDQTPANWSESDGWTSVR* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1605 346 Gene3D Transferase(Phosphotransferase) domain 1 3 292 - -
Gso1g1605 346 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1605 346 SUPERFAMILY Protein kinase-like (PK-like) 5 304 IPR011009 -
Gso1g1605 346 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1605 346 CDD STKc_MAPKKK 3 262 - -
Gso1g1605 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Gso1g1605 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 306 - -
Gso1g1605 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Gso1g1605 346 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1605 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1605 Gso-Chr1 52737367 52738715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1605 1 346 MAP Kinase Kinase Kinase AT4G36950 53.276 2.90e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso1g1605 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1605 - - gmx:100797177 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1605 1 52737367 52738715 Gso11g0474 11 4187807 4189262 GST
Gso1g1605 1 52737367 52738715 Gso17g1470 17 17971684 17973289 PCT
Gso17g1470 17 17971684 17973289 Gso1g1605 1 52737367 52738715 PCT