Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1603 ATGGACGTGGACAAACTGAAAACTTCCACTAGTGACAGCAGCATGGACATGATGATGATGATGATGCAAATGGAAAAGTTCCCTGAATTTTGTGAACCTTTTTATAACAACAACACTACTACTACTACTACTACTACTCTTCTCTACCCAGAAAACGAGTACTTCTTAAACTCCACCACCACCACTCTACCCGTGTTCCCCAACGTCAACAACCCAAACGTTATAACTCCACCACCCACCACTTTGATTAATCCACCACCACCTTCCTCCAATTTCGTTCTACAACAACCCATGACACCTCATCTTGAACCCAACCCGGAGAAGAAGAATTCTGTGGCGGCTATGAGGGAGATGATTTTCCGTGTAGCAGTGATGCAACCTGTTCATATAGACCCGGAATCCATCAAGCCACCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCTCAGAGTGTGGCGGCGAGACACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATCCTTCAGAGATTAGTTCCCGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAGGCCATACACTACGTGAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCAGGGGCAACTAGACCCTTGAATGTTGTTGGCTTCCCTACTACTGTGTCCAACGCCAATAATAATGTTAATTATTCTAGTTTTGTGAAGAGTTGCCAACCTTATCCAATGCTGGGTTCTTCAGCTTCTAAACAATTGCTCAGTTGA 756 0.4484 MDVDKLKTSTSDSSMDMMMMMMQMEKFPEFCEPFYNNNTTTTTTTTLLYPENEYFLNSTTTTLPVFPNVNNPNVITPPPTTLINPPPPSSNFVLQQPMTPHLEPNPEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLNVVGFPTTVSNANNNVNYSSFVKSCQPYPMLGSSASKQLLS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1603 251 Gene3D - 144 210 IPR036638 GO:0046983
Gso1g1603 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Gso1g1603 251 Coils Coil 184 204 - -
Gso1g1603 251 CDD bHLH_AtIND_like 146 202 - -
Gso1g1603 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 237 IPR045843 GO:0003700|GO:0006355
Gso1g1603 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 204 IPR036638 GO:0046983
Gso1g1603 251 Pfam Helix-loop-helix DNA-binding domain 155 194 IPR011598 GO:0046983
Gso1g1603 251 PANTHER TRANSCRIPTION FACTOR HEC2 1 237 - -
Gso1g1603 251 SMART finulus 151 200 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1603 Gso-Chr1 52719923 52720952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1603 12 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.721 4.31e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1603 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1603 - - gmx:100796649 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1603 1 52719923 52720952 Gso11g0476 11 4204317 4205412 GST