Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1600 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATATCGATACTGAGGGATTAAGGGAATATATGAGCAAGTTTGGTGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCAGAAGTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACACCTAAGGATGATGACTTTAAGCCAATTGGCAGAATGCCGCTGCCGCCGCCAACACAAGGAGGATATGGCGCATACAATGCTTATATTTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCAACCTGGCCCAATTTATGGAAGAGGAGACCCTTCTCGGAGAACTAGTAAGAAAATTTTTGTTGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGTCAATATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAACAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGCGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCAGGTGGCAATAGATTCGGCTACTCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAATCTTTTGGGGGATATGGTGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTAGACTTTGATGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1089 0.438 MEQRKLVVLGIPWDIDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPIGRMPLPPPTQGGYGAYNAYISAATRYAALGAPTLYDQPGPIYGRGDPSRRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRADWRYRPY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1600 362 SUPERFAMILY RNA-binding domain, RBD 225 328 IPR035979 GO:0003676
Gso1g1600 362 Gene3D - 1 87 IPR012677 -
Gso1g1600 362 Gene3D - 88 174 IPR012677 -
Gso1g1600 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 285 IPR000504 GO:0003723
Gso1g1600 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Gso1g1600 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Gso1g1600 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Gso1g1600 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Gso1g1600 362 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 362 - -
Gso1g1600 362 SUPERFAMILY RNA-binding domain, RBD 89 183 IPR035979 GO:0003676
Gso1g1600 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 305 IPR000504 GO:0003723
Gso1g1600 362 PANTHER OS01G0945800 PROTEIN 3 362 - -
Gso1g1600 362 Gene3D - 224 309 IPR012677 -
Gso1g1600 362 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Gso1g1600 362 SMART rrm1_1 230 301 IPR000504 GO:0003723
Gso1g1600 362 SMART rrm1_1 93 164 IPR000504 GO:0003723
Gso1g1600 362 SMART rrm1_1 5 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1600 Gso-Chr1 52696114 52700719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1600 6 278 Eukaryotic Initiation Factors Gene Family AT2G36660 22.545 1.37e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1600 K14411 - gmx:100795240 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1600 1 52696114 52700719 Gso11g0478 11 4229357 4233965 GST