Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1595 ATGTCGCAACGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCAGGGGACGGACCAGGTGATATCGTGGGGTGAAAGTGGGAACACTTTTGTGGTGTGGAAGCATGCGGATTTTGCAAAGGATTTGCTTCCAAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGACAGCTCAATACCTATGGATTCCGAAAAATTGTGCCAGACAAATGGGAATTCGCGAACGAGCATTTCAAGCGAGGGCAGAAGGAGCTTCTCTCCGAGATCAAACGCCGCAAGACCGTGCCTCAATCGTCGGCACATCCCCCGGAGGCCGGAAAGTCCGGCGGCGACGGCAACTCTCCGTTGAACTCCGGCAGCGACGACGCGGGCTCCACCTCAACCTCGTCCTCGTCCTCCGGTTCCAAGAACCAGGGATCGGTGGAAACAAACACAACGCCTTCTCACCAGTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTCCTCAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAAAACGTGGTAGGTGAAGGCGGTGGAGGAGACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGGGGATACGCTAACAGACAAAAGAAACAACAACAAAAGAGGCCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCAAAGCCCGTTGTTGACTTTGGAGCTGTAAATGTCATGATGAAGAGCAACAGGGTTTGCAACTGA 849 0.5312 MSQRSVPAPFLTKTYQLVEDQGTDQVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLSEIKRRKTVPQSSAHPPEAGKSGGDGNSPLNSGSDDAGSTSTSSSSSGSKNQGSVETNTTPSHQLSSENEKLKKDNETLSCELARARKQCDELVAFLRDRLMVGPDQIDRIMRQGSCGSENVVGEGGGGDCLKLFGVWLKGDTLTDKRNNNKRGREDQMGFGGPRLKESKPVVDFGAVNVMMKSNRVCN* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1595 282 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 Coils Coil 155 182 - -
Gso1g1595 282 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 MobiDBLite consensus disorder prediction 95 168 - -
Gso1g1595 282 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 282 - -
Gso1g1595 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 282 IPR027725 -
Gso1g1595 282 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 Gene3D - 2 101 IPR036388 -
Gso1g1595 282 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1595 282 MobiDBLite consensus disorder prediction 118 159 - -
Gso1g1595 282 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1595 Gso-Chr1 52634177 52636373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1595 2 282 HSF AT4G36990 52.027 2.63e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso1g1595 HSF_DNA-bind 7.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1595 K09419 - gmx:100791543 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1595 1 52634177 52636373 Gso11g0484 11 4289643 4291971 GST
Gso1g1595 1 52634177 52636373 Gso17g1484 17 18450859 18454820 PCT
Gso17g1484 17 18450859 18454820 Gso1g1595 1 52634177 52636373 PCT