Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1580 ATGGAAAGTCGAAAAAAGTGGTTGGTCTTTAAGAATTCTGATGTCTGGGTTTGTGTGTACAGTGTTTTTGCGAGGCAAGAAACAAGGTCAGCAGGGGTGGTGGCTGAGCAAGAGAGGAGTGAAGGAGATAAGTTTTGGTTGAGCGTCCCTCCAAGAAGTGCTCCAACGAGTCCTTTGGGCAGTCCCAGCAACAAAAACGATGATGATTTGGTTCCATACTATTACGTCTCACCCAAAGGAAACCAGTTCTGGTCTGCACCAGAGATGCCCACATTTGACTCTTCCCACCCACCTCCTGCCTTCTTTGATTTATCCGCATTACACACCGATAACATTCCTTCTCCCCACCAAAGCCCAACTAGGCTTTCTTCCTTATCCATTCCTCCCAAGTTATCCCTTGACACCTCTATAGCACGTCGTGAAACCACTGCTCCTCTCGCTGTTCACCCCTTACCCTTGCCTCCTTGGGCTGGGCCTGGGCCCCCCTTGCTTTCACCATCTTCTACCTTTTCCCCACCTGTGGCTAAGACTGAATCCTTGCCCATGAAAAACCAGTGGCAAAAAGGAAAACTTCTTGGTCGTGGTACTTTTGGAACTGTTTATGTTGCCACCAACAGAAAAACTGGAGCATTGTGTGCAATGAAGGAAGCAGAAATATTTTCTGATGATCCAAAGTCTGCAGAGTGCATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATCGTGCAGTATTATGGTAGCGAAATAGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATACGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCACATTCTTTCGGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGGGACATCAAAGGAGCTAACTTGCTTGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCACCTAACTGGACATGTTGCAGATCTTTCTTTAAAGGGAAGTCCATATTGGATGGCTCCAGAGCTTTTTCAAGCGGGTGTGCAAAAAGATAACAGCTCTGACCTAGCTTTTGCTGTTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGTTCACCGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCCGCAGCTATGTTTAAGGTAATGAAGGATACTCCTCCTATTCCAGAAACATTGTCGGCAGAGGGTAAAGATTTCCTGAGACTTTGCTTTATAAGAAATCCAGCAGAGCGACCAACTGCTTCAATGTTACTACAACATCGATTTCTGAAAAACTTGCAACAACCAGATGTTTCATCTTCCATGCAGCTGTATAATGGAACATCCTTGATGGATATCCATAGTCCCAAAGAGTTGTCTGAAAATAAACTTGATCAAATTTCTATTCCCAGTGCACATATTGCTAAAGGAAAATTAGCCACTGAGAGGTTCTTTCCCGGGATCAGCATTGATGCCCCTGCAAGTGACAAGCTTGTTCACTGTGGAGTTTACAGCATGAGGATATAG 1578 0.4404 MESRKKWLVFKNSDVWVCVYSVFARQETRSAGVVAEQERSEGDKFWLSVPPRSAPTSPLGSPSNKNDDDLVPYYYVSPKGNQFWSAPEMPTFDSSHPPPAFFDLSALHTDNIPSPHQSPTRLSSLSIPPKLSLDTSIARRETTAPLAVHPLPLPPWAGPGPPLLSPSSTFSPPVAKTESLPMKNQWQKGKLLGRGTFGTVYVATNRKTGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLQHPNIVQYYGSEIVEDRFYIYLEYVHPGSMNKYVREHCGAITECVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHVADLSLKGSPYWMAPELFQAGVQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSAEGKDFLRLCFIRNPAERPTASMLLQHRFLKNLQQPDVSSSMQLYNGTSLMDIHSPKELSENKLDQISIPSAHIAKGKLATERFFPGISIDAPASDKLVHCGVYSMRI* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1580 525 ProSitePatterns Protein kinases ATP-binding region signature. 192 215 IPR017441 GO:0005524
Gso1g1580 525 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 26 493 - -
Gso1g1580 525 SUPERFAMILY Protein kinase-like (PK-like) 169 471 IPR011009 -
Gso1g1580 525 SMART serkin_6 186 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1580 525 Coils Coil 525 525 - -
Gso1g1580 525 Gene3D Transferase(Phosphotransferase) domain 1 182 487 - -
Gso1g1580 525 Pfam Protein kinase domain 187 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1580 525 ProSiteProfiles Protein kinase domain profile. 186 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1580 525 MobiDBLite consensus disorder prediction 44 66 - -
Gso1g1580 525 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 26 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1580 Gso-Chr1 52462959 52466851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1580 17 502 MAP Kinase Kinase Kinase AT5G66850 59.273 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso1g1580 Pkinase 2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1580 - - gmx:100793654 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1580 1 52462959 52466851 Gso11g0496 11 4427329 4431410 GST
Gso1g1580 1 52462959 52466851 Gso17g1505 17 19349253 19354790 PCT
Gso17g1505 17 19349253 19354790 Gso1g1580 1 52462959 52466851 PCT