Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1578 ATGTCATCATCATCGAACTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTTCTCAACGAGCTCAGCGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCGCGTCTCCGGGACCCCGTCTACGGATGTGTCGGCCTCATCTCCGTCCTCCAACACAAGCTCCGGCAGATCCAGGTCGAACTCAACAATGCAAAGAAAGAACTCGCAACATATATTGGCCCCCAAGCGATTCAAGGAATTCCCGCCCCCATGCTCCAACAACACCCTAACAACCCCTTTCCCGGAGCCATGTATGGGAACATGCCGACTGCGACGGCCGCTGTTCACGGCGGGCAGTTGGTGATTCGCGACGCACAGCCGGCGCCTCAGCAGCAGCAGCAGCAGATCTTGGAGGCGCAGCAGTTGGCTGCCGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTTAGGAGTTACGAACACCAACAGCAGCAGGAGTTTCTAGGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAAGTGTCCCCAGCTGCTGCCTCTGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAGCAACCGCAGCAAGAAGAGCCTCACCATCATCATCATCATCCTCATCACATTCCTCTTGAGGCGCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCGCAACTGCCCCTTCACCAGCAACATTCTGATAACGAGGAGCGTAGGAGTGTTGGTCCATCTTGTTGA 915 0.5749 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELNNAKKELATYIGPQAIQGIPAPMLQQHPNNPFPGAMYGNMPTATAAVHGGQLVIRDAQPAPQQQQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLGFSGGFDVGSASSAGGFSQVSPAAASADQLSPSLALGSFDNAYHMQQPQQEEPHHHHHHPHHIPLEAQLLLPPQQKQQTHHESQLPLHQQHSDNEERRSVGPSC* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1578 304 MobiDBLite consensus disorder prediction 272 304 - -
Gso1g1578 304 Coils Coil 87 107 - -
Gso1g1578 304 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gso1g1578 304 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Gso1g1578 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 277 - -
Gso1g1578 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1578 Gso-Chr1 52439644 52443432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1578 3 231 AS2 family AT5G66870 54.435 2.35e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso1g1578 LOB 9.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1578 - - gmx:102664012 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1578 1 52439644 52443432 Gso11g0498 11 4444500 4448314 GST
Gso17g1508 17 19475824 19476399 Gso1g1578 1 52439644 52443432 PCT