Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1576 ATGGTTGTTTGCGACTTCTGGGAGCTCAGTCTCGCTCAGAGTCAGAGAAAAACACCCAAATCAAATATTATCATGGAGCCCAGCTTGGATTTGAGACTGGGCTTTGTCCCCAAACCCCTTTCCCTGTTTTTCGGCGACGTTTCTGGGAACAGAGACAAGTGCGACAAAGTGGTCACACTCGATGGCTTCGTGCAGAGATTGGAGGAAGAGTTGACAAAGGTCGAGGCTTTCAAACGCGAGCTTCCTCTCTGCATTCTCCTCCTAAACGATGCTATAGCGAGATTGAAGGAGGAAAAAGTGAAGTGTTCGGGAATGCAAGATCCGCCTCTTAAAACCAGTTCAGGAGGAAATGAAAATGAAAACTCTGAGAAGAAGAATTGGATGAGTTCAGCACAGCTTTGGAGCACTCAGAAATCCAAATCGAGGAATGAGGAAGATGATAGGTCTGTGCCAGCGAGCTCAATTAATGGGAATTCGTGTGTCCCCGAGAAGGAGGGCTCGCAAGTTCCGAGCTTTGGTTTGATGGCTCGTGCTTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTGGTGGAGATACTAGTTCTGGCTCCTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAGCCGCCGCAGCATATGCAGCAGAATCCGAGGAAACAACGGCGGTGCTGGTCGCCGGAGCTTCACCGGCGCTTTGTGGACGCCCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGTCATTTGCAAAAGTACAGGCTTCATGTTAGGAGATTCCCAGTTTTTTCAATTGGCCAGGTTGATAATGGCTCATGGATGACACAGGATGAATGTGGGGATAAATCAAAGGGAAACATGTCACAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTGCTCCTAGGAGGAGCAGGATCCGCTAAGGGTCTCTCAAGCCCTGGACGGAACAGTGTGGATGCAGAAGATGAGCAATCATCAGATTGCCGGAATTGGAAAGGAGGGCTCCACCACCAGCAGCTTGAAACTGATAATCACAGCCTCTAA 1104 0.49 MVVCDFWELSLAQSQRKTPKSNIIMEPSLDLRLGFVPKPLSLFFGDVSGNRDKCDKVVTLDGFVQRLEEELTKVEAFKRELPLCILLLNDAIARLKEEKVKCSGMQDPPLKTSSGGNENENSEKKNWMSSAQLWSTQKSKSRNEEDDRSVPASSINGNSCVPEKEGSQVPSFGLMARASELSHSNSKSVGGDTSSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVFSIGQVDNGSWMTQDECGDKSKGNMSQSGSPQGPLTPLLLGGAGSAKGLSSPGRNSVDAEDEQSSDCRNWKGGLHHQQLETDNHSL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1576 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 363 IPR044787 GO:0003700|GO:0006355
Gso1g1576 367 MobiDBLite consensus disorder prediction 291 367 - -
Gso1g1576 367 SUPERFAMILY Homeodomain-like 218 278 IPR009057 -
Gso1g1576 367 MobiDBLite consensus disorder prediction 150 165 - -
Gso1g1576 367 Pfam Myb-like DNA-binding domain 222 273 IPR001005 -
Gso1g1576 367 MobiDBLite consensus disorder prediction 340 367 - -
Gso1g1576 367 MobiDBLite consensus disorder prediction 107 138 - -
Gso1g1576 367 MobiDBLite consensus disorder prediction 203 222 - -
Gso1g1576 367 MobiDBLite consensus disorder prediction 291 315 - -
Gso1g1576 367 MobiDBLite consensus disorder prediction 102 167 - -
Gso1g1576 367 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 220 275 IPR006447 GO:0003677
Gso1g1576 367 Gene3D - 219 276 - -
Gso1g1576 367 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 22 363 - -
Gso1g1576 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 277 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1576 Gso-Chr1 52423221 52425441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1576 28 270 G2-like Transcription Factor Family AT4G37180 41.288 1.08e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso1g1576 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1576 - - gmx:100785723 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1576 1 52423221 52425441 Gso11g0500 11 4460240 4462356 GST
Gso17g1510 17 19520200 19523304 Gso1g1576 1 52423221 52425441 PCT