LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g1574	ATGGATCGGCCGGCGACCGGACCTGGCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTTCGGGATATTGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAACAGACGCAAGAGCTTGTTGCTGTCAAGTATATTGAACGCGGAGATAAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTTATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGTGGAGAACTATTTGAGAAAATCTGCAATGCAGGGCGTTTTAATGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTATTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTATCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACTATTCCTGAAATATTGCAAAATGAATGGTTTCTGAAAAATCTTCCTCCTTACTTGATGGATGAAAAGATCATGGGTAACCAATTTGTAGAATCAGATCAGCCCATGCAGAACATTGATACGATCATGCAGATAATTTCAGAAGCCACCATACCAGCTGCGGGGACCTATTCTTTAGACCAGTTTATGGCTGATAACATAATAGATGATGACATGGATGAATTAGACTCTGACTTTGAGCTTGATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAA	1080	0.4278	MDRPATGPGVDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFEKICNAGRFNEDEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLFVMLVGSYPFEDPNDPKDFRKTIQRVLSVQYSIPDNVQVSPECRHLISRIFVFDPAERITIPEILQNEWFLKNLPPYLMDEKIMGNQFVESDQPMQNIDTIMQIISEATIPAAGTYSLDQFMADNIIDDDMDELDSDFELDVDSSGEIVYAI*	360

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso1g1574	359	SMART	serkin_6	21	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso1g1574	359	ProSitePatterns	Protein kinases ATP-binding region signature.	27	50	IPR017441	GO:0005524
Gso1g1574	359	SUPERFAMILY	Protein kinase-like (PK-like)	14	319	IPR011009	-
Gso1g1574	359	PANTHER	SERINE/THREONINE KINASE	13	353	-	-
Gso1g1574	359	Gene3D	Transferase(Phosphotransferase) domain 1	97	283	-	-
Gso1g1574	359	ProSiteProfiles	Protein kinase domain profile.	21	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso1g1574	359	Gene3D	Phosphorylase Kinase; domain 1	1	96	-	-
Gso1g1574	359	Pfam	Protein kinase domain	21	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gso1g1574	359	PANTHER	SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE	13	353	-	-
Gso1g1574	359	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	136	148	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g1574	Gso-Chr1	52388155	52397481	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g1574	20	281	CBL-interacting serine-threonine protein kinases	AT5G25110	44.161	1.30e-67	219

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Gso1g1574		Pkinase	8.7e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g1574	K14498		-	gmx:100783967	711.449

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso1g1574	1	52388155	52397481	Gso11g0504	11	4491833	4498470	GST
	Gso17g1513	17	19623055	19628087	Gso1g1574	1	52388155	52397481	PCT

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