Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1566 ATGTTTATTCTTCGTCACCATACAAATCTCGCTATAGTCCTCACTATCTTCATAGCTTGCACAACAAGAGCACAAAACCTCACCACCTGCAATGGCAAATGCGGGGAGCACACCCTTCAGTTCCCTTTTGGCTTCTCCCAAGGTTGTCCAATCCAGCTTGACTGTTCCAACGACCAAGTCCAACTTCGCAGCGAATTCGGTGAATTTCTGGTCCAAAACGTAACAAACAGCAACATATTCGTAAATCTCCCTGCAAAATGCAACCGTACCATGGAATCAATTCAGCCAATTTTTACTGAGAATTTTGCCCCAACGATTAACAATAGCTTTCTGGTGCAAGATTGTAGAGAGGTGTTTGGTGGGTGTGTTATTCCTGCTAGTTTTGTGAGCAACCAAATTGATGTTGAGAACTGCAGCAACAAAAGTGCTAATATCAGTTGCTTTTCGAAACAAGATGAAGTTTTTGTGACGTACGCTGATTTGAACGGGACTAAGTGTAAGTACTTGTTCTCTGCGGTTTCTTTTGGGCAGAGCAAGGAGATTCCGCTGCAGTTTCAGGTTGTTGAGTTGGGGTGGTGGCTTCCTGGGCAGTGCGATGATCATCAATGTTCTAACAACGCTACCTGCACAACGGTCGACAGGGTTGGGTTCCGGTGCCAGTGTATCGAAGGTTTCACCGGAGACGGCTTCAAAAACGGCATCGGTTGCCGGAAAGCTTCGGCTTCAAGTTGCAGTGCTTCAACACTAACGTCCGGTGGATGTGGGAAAGCAACTAAAATCGGTGTTGTTGTTGGAGTAATCACCACTGGAGCTTTGGTGGTGGCTGGTCTGTTTCTTCTATGCTACTGTGCCAGGCGGCGTTCTACTTGGTTGAGAAAACATACCATGGTAAAGCGCCAATTACGCGAAGCTGCAGGCAACTCTAGTGTACCTTTCTATCCCTACAAAGAAATAGAAAAGGCGACAAATTTTTTCTCTGAGAAACACAGGCTTGGAACTGGGGCATTTGGTACAGTTTATGCTGGAAAACTGCACAATGATGAGTGGGTTGCTATAAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGATCAAGTCATGAATGAAATCAGGCTACTTTCTTCAGTGAGTCACCCGAATTTAGTTCGCCTCTTAGGTTGCTGCATAGAGAAGGGAGAGCATATCCTTGTTTATGAGTTTATGCAAAATGGAACACTTTCTCAGCACTTGCAAAGAGAGAGGAGTAAAGGACTACCGTGGACAATAAGACTTACCATTGCTACCGAAACTGCTAATGCTATAGCATATCTCCATTCTGCAATTCATCCCCCAATTTACCACAGAGACATAAAATCTACTAATATACTCTTGGATTATGGCTTCAAATCTAAAATAGCCGATTTTGGGCTTTCTAGGCTTGCATTGACAGAAACATCTCATATCTCAACCGCCCCACAAGGGACTCCAGGTTATGTCGATCCCCAATACCACCAGAACTTTCAGCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCTCGACCTCGAAGTGAGATTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGAGGTGCTGTAGATGAGATCATAGACCCCTTCCTTGAACCACATAGAGATGCTTGGACACTGTATTCTATTCATAAAGTGGCCGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGATGGAAGTAGCAGAAGAGCTAGAACACATTAGACGCAGTGGATGGGCATCTATGGAGGAAACTCTCACGGCTTCACCGATTGGGTCCACTAGTTCATCACCTCGTCATGGAAGTGAGAAGTCACTGGGTGGTATCAAAAAAGCTCGGCAAGGCCAAGGGAGTGAGAGATTGATTGTTCCGCAGAAGACGGAGAGCTTTTTGCAATCTATGGAGGTGAAGGACAGCTCCCCTGTATCAGTGCATGATCCAATTCCTTGGTCAAGTGGACACAGCTCACCTTCATCAAACAGCTTGTTGGGAAATGTCATCCCTTGA 2085 0.4475 MFILRHHTNLAIVLTIFIACTTRAQNLTTCNGKCGEHTLQFPFGFSQGCPIQLDCSNDQVQLRSEFGEFLVQNVTNSNIFVNLPAKCNRTMESIQPIFTENFAPTINNSFLVQDCREVFGGCVIPASFVSNQIDVENCSNKSANISCFSKQDEVFVTYADLNGTKCKYLFSAVSFGQSKEIPLQFQVVELGWWLPGQCDDHQCSNNATCTTVDRVGFRCQCIEGFTGDGFKNGIGCRKASASSCSASTLTSGGCGKATKIGVVVGVITTGALVVAGLFLLCYCARRRSTWLRKHTMVKRQLREAAGNSSVPFYPYKEIEKATNFFSEKHRLGTGAFGTVYAGKLHNDEWVAIKKLRQRDTNSADQVMNEIRLLSSVSHPNLVRLLGCCIEKGEHILVYEFMQNGTLSQHLQRERSKGLPWTIRLTIATETANAIAYLHSAIHPPIYHRDIKSTNILLDYGFKSKIADFGLSRLALTETSHISTAPQGTPGYVDPQYHQNFQLSDKSDVYSFGVVLVEIITAMKVVDFARPRSEINLAALAVDRIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIRRSGWASMEETLTASPIGSTSSSPRHGSEKSLGGIKKARQGQGSERLIVPQKTESFLQSMEVKDSSPVSVHDPIPWSSGHSSPSSNSLLGNVIP* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1566 694 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 19 670 - -
Gso1g1566 694 MobiDBLite consensus disorder prediction 613 694 - -
Gso1g1566 694 ProSiteProfiles Protein kinase domain profile. 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1566 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gso1g1566 694 MobiDBLite consensus disorder prediction 646 694 - -
Gso1g1566 694 MobiDBLite consensus disorder prediction 613 628 - -
Gso1g1566 694 Gene3D Transferase(Phosphotransferase) domain 1 401 615 - -
Gso1g1566 694 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 670 IPR045274 GO:0007166
Gso1g1566 694 SUPERFAMILY Protein kinase-like (PK-like) 307 598 IPR011009 -
Gso1g1566 694 Gene3D Laminin 199 232 - -
Gso1g1566 694 Gene3D Phosphorylase Kinase; domain 1 285 400 - -
Gso1g1566 694 Pfam Protein tyrosine and serine/threonine kinase 328 597 IPR001245 GO:0004672|GO:0006468
Gso1g1566 694 Pfam EGF domain 200 230 IPR024731 -
Gso1g1566 694 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Gso1g1566 694 ProSiteProfiles EGF-like domain profile. 194 231 IPR000742 -
Gso1g1566 694 SMART egf_5 197 237 IPR000742 -
Gso1g1566 694 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Gso1g1566 694 SMART serkin_6 325 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1566 Gso-Chr1 52327802 52334143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1566 1 692 Receptor kinase-like Gene Family AT2G23450 56.259 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso1g1566 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1566 - - gmx:100779130 1381.31