Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1547 ATGGAAGTGCTGCCTTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACAGCATTTGTATACCAGGAACAACCTAATTGCCCCGAAAATGGTGAACATGTCAACTTTGTAGCTGCTCAACTGAATGAATCATCACATAAGATGCAAGGGCCTCAGATAGAAAGACATTTGTCGACTAATTCAGATTGCCAATGCATTGGAACTTCATGTTGTGATTGTCAAGTGGATGACCAACATGAATATTGTGGTTTTCATGATTTTGAAGAAGACATGATTAATGAACCTTGCTTGACATCTGAGAACTTTATCTCTGTTGTGGATACAATTGAAATTGAATCACCAAACAACAGTAGGGAAGGAGACTTGTCATGTTCCGAACCCAAGTGGCTAGAGGGAGATGAATCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGTATCCGGTGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCATGACAGAAAGAAATATTTTGTTATATTTTTTCCACACACAAGAATTTATTCTTGGGCAAACATGCTGCTTGTTAGATCAATTAATGAGTATCCCCATCCTATTGCATATAAGACTCATCAGGTGGGATTGAAAATGGTAAAAGACTTAACTGTTGCACGGCGCTTTATAATGCAAAAGCTAGTTGTTGGTTTGCTGAACATGGTCGATCAGTTTCATTTTAATGCTTTGACAGAAACTGCACGTGATGTGAAGGTCTGGAAGGAATTTGCCATGGAGGCTTCTCGTTGTAAGGGTTATTCCAATTTTGGAAGAATCCTTCTAAAGCTGCATAAAAGCATACTGCAGCACCATATAAATGCTGACTGGTTACAGCATTCTTATCTCTCTTGGGCTGAAAGATGTCAGAGTTCAAATAGCGCTGAATCAGTGGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGGGGTCAATACTCTCTGGGATGCAGTTGCACCAATGCAATCAACATTAGGTTCTGAATGGAAAACCTGGAAGCAGGATGTGATGAAATGGTTTTCTGCACCACCTTCCTTATCGAGCAGCAAAGACACCCAGCAACAGAGTTCTGATGATTTGTACCAAGCAAACCTTCAGGTTTGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAAATCAAGGACCAAACTATTGCTCTTGAAGCTGACCCTGGCTTCTTTAAGAATCAGGACACGTTGAGCACAATAGCAGTTCAGTCTTGCAAACAGGAAGGTGTTAGGGAGGTGTCTATGACAACTTCACCTAGTAATTTGGCAAATAAATGGAATGAAATTGTAGTTGAGGCTACCGCTTCTGATTTCTTACATATCAAAGAAATGGAATCAACACCTACAAATGAAATGAGTGTTGCAAAATCTGTAGAACCTGGTAGTAAGAATCGACAATGTATAGCTTATATTGAAGCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTATACTGTTGTGTACATTTGTCCTCTCGATTTTTGGGCAGCTCAACAAAATCCGAAAAGCCTGTTCCAGTTGATACTCCAATGTGTGAAGGTACAACTGTTCTGGGTACTAGATGTAAGCATCGTGCCCTACCTGACTCTTTATTCTGTAAGAAACACAGGCCACATGCTGAAACAGAGCAGACCTCAAATTTACCCCAGAATACACTAAAGAGGAAGCATGAAGAAAATTATACTGGTTCAAAGGACATGTATGCATTGGTAAATGTTGAGAGTCCACTGCAAGTGGATCCAGTGTCATCCATTGGTGGTGATTCTGTACATGTAGAAAGCAACTTTAATGAGAAGCCCAAGCATTCTGAAAATGATCATAATGCAGTGGTGTCAATGCACTGTATAGGTTCTCCTCCCTATGATTACAAGAATCCTTGTAGGGAAGGTCCTAAAAGGTATTGCTTGTACTGTGAAAGACACCTTCCAAGCTGGCTTAAGCGTGCTAGAAATGGGAAGAGTAGAATAGTATCAAAAGAAGTGTTCACAGAACTTTTGGGGGAATGTAGCTCGTGGGAGCAAAAGGTACATCTTCATAAAGCATGTGAACTTTTTTACAGGCTGTTCAAAAGCATTTTATCATTAAGAAATCCTGTTCCTAAGGATGTCCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATTCCAATGTAGGAGAGTTTTTTACAAAGTTAGTTCATAGTGAAAAGGCGAGAATCAAGTCAATATGGGGATTCAATGATGACATGGATATATCCTCTATCATGGAAGAACCACCTCTCTTGCCATCCACAATTAATGATAACTATGATGAGGAAAATGCCATCAAGTGTAAGATATGCTCTGCAGAATTTCCTGATGACCAAGCACTTGGTAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGCTATGCATGTGCCATTTGTCTGGATTCATTTACTAACAAAAAACTATTGGAAACTCATGTTCAGGAGAGGCATCATGTGCAATTTGTTGAACAATGCATGCTTCTCCAATGCATTCCTTGTGGGAGTCATTTTGGAAATACTGAACAATTATGGCAGCATGTTTTACTAGTTCACCCTGTTGATTTTAAACCATCAACAGCTCCTAAGCAGCAAAATTTTTCTACTGGCGAAGATTCTCCTGTAAAACATGATCAGGGAAATTTAGCCCCCTTGGAGAATAATTCTGAGAATACGGGTGGTTTACGGAAATTTGTTTGCAGGTTTTGTGGATTGAAATTTGATTTACTACCTGACCTAGGTCGACATCACCAAGCTGCTCATATGGGGCCGAATCTGGCTAGCAGTCGCCCTGCAAAGAGGGGAGTTCGCTATTATGCATATAGATTAAAATCTGGCAGACTTAGCCGCCCTAAATTTAAAAAAACTTTGGCAGCAGCATCATACAGGCTCAGAAATAAGGCTAATGCTAATTTAAAGCGAGGCATTCAGGCATCAAACTCACTTGGCATGGGAGGAATAACCATACAACCTCATGTTACTGAAAGTGAAACAACAAATATTGGTAGATTGGCAGAACATCAATGCTCCGCTGTTTCAAAGATTTTGTTTTCAGAGATTCAGAAAATGAAACCTCGGCCTAACAATCTTGATATTTTATCAATTGCTCAGTCTGCTTGCTGCAAAGTTAGTCTTGCAGCCTCACTAGAGGAGAAATATGGAATTTTGCCTGAAAAGCTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGAATAGTATTTTGGTAAATTGGCATCAGGAGGGGTTTATTTGTCCTAGAGCTTGTAATGTATCAAAGGATCAAGCTTTGCTCTCTCCTTTAGCTTCTCTTCCTAATAGTTCTGTAATGCCCAAATCTGTGAATTTATCTGATCCTGCAAGTGATGAGTGGGAGGTGGATGAATTTCACTGCATCATCAATTCGCATACTTTAAAAATAGGTTCACTGCCAAAAGCTGTTATCTTGTGCGATGACATTAGCTTTGGGAAGGAATCAGTTCCAGTGAGTTGTGTGGTAGATCAAGAACTTATGCATTCTCTTCATATGAATGGGTGTAACAGACAAAATATAAGCCCTTCTATGCCTTGGGAGACCTTTACCTATGTTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGACTCAGAGAGCCTGCAACTGGGATGTGCCTGCTTATGCATTACTTGCTGTCCGGAAACTTGTGATCATGTATACCTTTTTGGCAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGCCGAATAATCTTAGAGGAAGGTTATCTTGTCTATGAGTGTAATCATATGTGCAGATGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCCGGTGAAGCTATTCTACGTGGCACATTTGTGTGTGAATACATTGGAGAAGTTTTAGATGTGCAGGAGGCACGTGATAGGCGCAAGAGATATGGCGCAGAGCATTGCAGTTATTTGTATGACATCGATGCTCGTGTTAATGATATGGGCAGATTGATTGAAGAACAAGCTCAATATGTAATTGATGCTACTAAGTTTGGAAATGTCTCAAGATTCATCAATCATAGCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTGTGAACGTGCACATATTGGTTTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTAACATATGACTATCAGTACGAGCTTATGCCTGGAGAAGGATCTCCTTGTCTTTGCGAATCCTTGAAGTGCAGGGGACGCCTTTATTAG 4479 0.407 MEVLPCSGVQYAGESDCPQQSSGTAFVYQEQPNCPENGEHVNFVAAQLNESSHKMQGPQIERHLSTNSDCQCIGTSCCDCQVDDQHEYCGFHDFEEDMINEPCLTSENFISVVDTIEIESPNNSREGDLSCSEPKWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRIYSWANMLLVRSINEYPHPIAYKTHQVGLKMVKDLTVARRFIMQKLVVGLLNMVDQFHFNALTETARDVKVWKEFAMEASRCKGYSNFGRILLKLHKSILQHHINADWLQHSYLSWAERCQSSNSAESVELLKEELFDSILWNGVNTLWDAVAPMQSTLGSEWKTWKQDVMKWFSAPPSLSSSKDTQQQSSDDLYQANLQVCRKRPKLEVRRADTHASQVEIKDQTIALEADPGFFKNQDTLSTIAVQSCKQEGVREVSMTTSPSNLANKWNEIVVEATASDFLHIKEMESTPTNEMSVAKSVEPGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSTKSEKPVPVDTPMCEGTTVLGTRCKHRALPDSLFCKKHRPHAETEQTSNLPQNTLKRKHEENYTGSKDMYALVNVESPLQVDPVSSIGGDSVHVESNFNEKPKHSENDHNAVVSMHCIGSPPYDYKNPCREGPKRYCLYCERHLPSWLKRARNGKSRIVSKEVFTELLGECSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDSNVGEFFTKLVHSEKARIKSIWGFNDDMDISSIMEEPPLLPSTINDNYDEENAIKCKICSAEFPDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNTEQLWQHVLLVHPVDFKPSTAPKQQNFSTGEDSPVKHDQGNLAPLENNSENTGGLRKFVCRFCGLKFDLLPDLGRHHQAAHMGPNLASSRPAKRGVRYYAYRLKSGRLSRPKFKKTLAAASYRLRNKANANLKRGIQASNSLGMGGITIQPHVTESETTNIGRLAEHQCSAVSKILFSEIQKMKPRPNNLDILSIAQSACCKVSLAASLEEKYGILPEKLYLKAAKLCSENSILVNWHQEGFICPRACNVSKDQALLSPLASLPNSSVMPKSVNLSDPASDEWEVDEFHCIINSHTLKIGSLPKAVILCDDISFGKESVPVSCVVDQELMHSLHMNGCNRQNISPSMPWETFTYVTKPMLDQSLSLDSESLQLGCACLCITCCPETCDHVYLFGNDYDDAKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDVQEARDRRKRYGAEHCSYLYDIDARVNDMGRLIEEQAQYVIDATKFGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGFYASRDIALGEELTYDYQYELMPGEGSPCLCESLKCRGRLY* 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1547 1492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1492 - -
Gso1g1547 1492 MobiDBLite consensus disorder prediction 906 933 - -
Gso1g1547 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 945 966 IPR013087 -
Gso1g1547 1492 ProSiteProfiles Zinc finger C2H2 type domain profile. 943 971 IPR013087 -
Gso1g1547 1492 Gene3D SET domain 1177 1473 IPR046341 -
Gso1g1547 1492 ProSiteProfiles Zinc finger C2H2 type domain profile. 840 863 IPR013087 -
Gso1g1547 1492 Gene3D Classic Zinc Finger 793 866 - -
Gso1g1547 1492 ProSiteProfiles Post-SET domain profile. 1476 1492 IPR003616 -
Gso1g1547 1492 SMART set_7 1337 1475 IPR001214 GO:0005515
Gso1g1547 1492 Pfam Zinc finger C2H2-type, 3 repeats 842 967 IPR040689 -
Gso1g1547 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 876 897 IPR013087 -
Gso1g1547 1492 ProSiteProfiles Pre-SET domain profile. 1258 1334 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1547 1492 ProSiteProfiles SET domain profile. 1337 1469 IPR001214 GO:0005515
Gso1g1547 1492 Pfam SET domain 1348 1468 IPR001214 GO:0005515
Gso1g1547 1492 SMART preset_2 1194 1321 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1547 1492 MobiDBLite consensus disorder prediction 906 920 - -
Gso1g1547 1492 SUPERFAMILY SET domain 1187 1482 IPR046341 -
Gso1g1547 1492 SMART c2h2final6 840 863 IPR013087 -
Gso1g1547 1492 SMART c2h2final6 874 897 IPR013087 -
Gso1g1547 1492 SMART c2h2final6 806 829 IPR013087 -
Gso1g1547 1492 SMART c2h2final6 943 966 IPR013087 -
Gso1g1547 1492 Pfam Pre-SET motif 1197 1329 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1547 1492 ProSitePatterns Zinc finger C2H2 type domain signature. 808 829 IPR013087 -
Gso1g1547 1492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1547 Gso-Chr1 52162236 52176618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1547 111 1491 C2H2 Transcription Factor Family AT2G23740 51.496 0.0 1393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g1547 Pre-SET 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1547 - - gmx:100786757 3068.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1547 1 52162236 52176618 Gso11g0528 11 4709338 4722882 GST