Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1545 ATGTCCCAAGATTTTCAACAAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGTGATGAGTCCGCAGCAGCAGATCCGGCGGGACAAGGTAAGGTTCGAGGCGGCGCCATTGGTAGGGATAGAGGAGGAGGAACCAGTGTACGAGACCGCCGGAATGTTGTCGGAGATGTTCAATTTTCCGCCCGCGACGGAATTGCTGGAGCAGCAGCACGCCACGGCGACGTTCCGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAGCAACAGCAACAGATTTCAGGCATTAATGCTGACTCAGCAGCAGCCATGCAACTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCTCCTCCTCAAAGCCACACTACTCCTTCTTCAACTCTTCACATGTTGCTTCCAAATCCTTCTTCCAATTCCCTCCAAGGATTTACTGGTTCGGCCGCGGGAGGGTCTTTTGGTCAATTCACATGGGTTCCTGAGGGTGCTCACCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGCTGTCTTCTTCGTTGGAGGCAGCGAAAGCCGAGGAATTGAGGATGGGCGATAGTGGTTTTCTATATTACAATCACCAACAAGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTCCTTCTTCTTCTTCTTCGGCGGTTCAGTTTCAGTACAAGAATAATAATAGCCATCATCATCAAGCATTGCATTTACAAGGGGCGATGGGACACGACAACAACCACCAGGGACATGTTGGGTTTGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAATTCAAAGTATGTGAAGGCTGCACAAGAGTTGCTGGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGACAGAATTCAAACCCTAATTCAAATCCCGGTGGTGGTGGTTCTTCGCCTTCATCAAAAGATGCGCCTCCTCCTCCTCCTCCTTTGTCAGCGGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTACTATCTATGCTTGACGAGGTGGACAGGAGATACAACCACTACTGCGAGCAAATGCAAATGGTAGTGAACTCATTTGACCTGATGATGGGATTTGGGGCGGCAGTGCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGAGGCGATAACAGCGCAGCTGAAGCAAAGTTGTGAAGTACTTGGAGACAAAGATGGGGCGGGAAGCTCAGGAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGATGTTAGAACAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAGCAGAGAGTGCAGAAGAGAGAGAAAAGGACCAAAGCAACAACATTAGTGGCAACCAAGCACAAATTCCAACAACACCATCAGCGGCCACAACATCAACAGCAACAGCAACAGCGCCACCACCACCACCATCAACAACGACAAAAACAACAAAACCGACAGGCAAAAGATCCGATACCATCAATGCCCCCGAAAGCGACCCTTCACAGCACCTTGCAATGAATAACAGACAAGGCTTCTCGGAAAACCAAGCAAAGAAGTCCACCGCATCCACCACCACCACCACCATCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACGACTCAGACCTGCCCGCACACAGATTAATGGCCTCTGATGACACGTGTCATTTGGTCACAGCAGATTTTGGGACCGCATCTGCAAGTGCTGACATTGGATCCACACTCATTAGGTTTGGGACCACACCCGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCCGAGAAATCTCCTTTCTCTGTTAGAGACTTTGGAGCCATTTAA 2133 0.5077 MSQDFQQGIFSFPNGLERGRVMSPQQQIRRDKVRFEAAPLVGIEEEEPVYETAGMLSEMFNFPPATELLEQQHATATFRAARQAGEWYGNRQQQQQQISGINADSAAAMQLFLMNPQTRSPSPPQSHTTPSSTLHMLLPNPSSNSLQGFTGSAAGGSFGQFTWVPEGAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGGGGGGGGPSSSSSAVQFQYKNNNSHHHQALHLQGAMGHDNNHQGHVGFGSSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNPGGGGSSPSSKDAPPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQLKQSCEVLGDKDGAGSSGGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESAEEREKDQSNNISGNQAQIPTTPSAATTSTATATAPPPPPSTTTKTTKPTGKRSDTINAPESDPSQHLAMNNRQGFSENQAKKSTASTTTTTIASEVAPPVSQCFDDSDLPAHRLMASDDTCHLVTADFGTASASADIGSTLIRFGTTPGDVSLTLGLRHAGNMPEKSPFSVRDFGAI* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1545 710 MobiDBLite consensus disorder prediction 527 541 - -
Gso1g1545 710 MobiDBLite consensus disorder prediction 116 149 - -
Gso1g1545 710 SUPERFAMILY Homeodomain-like 458 524 IPR009057 -
Gso1g1545 710 SMART HOX_1 457 521 IPR001356 GO:0003677
Gso1g1545 710 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 699 - -
Gso1g1545 710 CDD homeodomain 457 518 IPR001356 GO:0003677
Gso1g1545 710 MobiDBLite consensus disorder prediction 299 318 - -
Gso1g1545 710 MobiDBLite consensus disorder prediction 577 601 - -
Gso1g1545 710 ProSiteProfiles 'Homeobox' domain profile. 454 517 IPR001356 GO:0003677
Gso1g1545 710 MobiDBLite consensus disorder prediction 527 601 - -
Gso1g1545 710 MobiDBLite consensus disorder prediction 299 337 - -
Gso1g1545 710 MobiDBLite consensus disorder prediction 542 564 - -
Gso1g1545 710 Pfam Associated with HOX 271 403 IPR006563 -
Gso1g1545 710 Gene3D - 460 522 - -
Gso1g1545 710 Coils Coil 520 543 - -
Gso1g1545 710 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 44 699 - -
Gso1g1545 710 SMART prehox3 266 404 IPR006563 -
Gso1g1545 710 Pfam Homeobox KN domain 474 513 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1545 Gso-Chr1 52129796 52137213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1545 1 504 Homeobox Transcription Factor Family AT4G36870 54.595 1.20e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso1g1545 POX 8.8e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1545 - - gmx:100786231 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1545 1 52129796 52137213 Gso11g0530 11 4740128 4748287 GST
Gso1g1545 1 52129796 52137213 Gso2g0503 2 5347053 5355693 PCT
Gso1g1545 1 52129796 52137213 Gso16g1145 16 30468856 30477325 PCT
Gso2g0503 2 5347053 5355693 Gso1g1545 1 52129796 52137213 PCT
Gso16g1145 16 30468856 30477325 Gso1g1545 1 52129796 52137213 PCT