Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1544 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATTATAAAATTTTACGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAATCATCATAGTTCGATGGATGATTTGACAGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTGTTGATTACGACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATGATGAGGAAGATGAACATCTTGTTAAAGTTCATCTAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGATGAACGTCTTGCTAAAATCCAACAAGAGGATGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGCTTGAAAATTGGTTCTCCTCCTCGATATGACAACGATTCTTCAATTCTATCTTTTCCTCACCTCTTTCCCCCCGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGTCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAAGCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGTAAGAACTTTATCCCAACTAATTCATCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCTAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTACGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTGGTTGAGAGACAAGCTCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGGCTATGCTTGTCAGAAGAGCAAACTGTCACCACCATTTCAAGGAGGCCAAGGATTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTGGAATCAGAGCTCTATTCTGGAACTGGGAATGACGGTGCATCATCCTCAGCATCATCTTCTTCTTCATCATCGCCTTCCTCTTCTGTTTCAACAAAGAAGGGTAAACGGTCCGACTTTGAGAAGAAACTTGGTGAATTTTTTAAACACCAGATTGAGTCAGATACCTCTTCAGCATATGGAGATGGATTCAGATTGGGTAACCAAGCAATGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTGA 1641 0.4113 MGWFTKLLKGSDYKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVDYDSQSEDEELCKIDDEEDEHLVKVHLEEEERLAKIQQEEEERLAKIQQDERLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPRYDNDSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKACYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRAIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGTGNDGASSSASSSSSSSPSSSVSTKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAMLKYGLKRTLDHIHMTGSFPY* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1544 546 Coils Coil 94 117 - -
Gso1g1544 546 ProSiteProfiles LIM domain profile. 175 235 IPR001781 -
Gso1g1544 546 SMART uim 43 62 IPR003903 -
Gso1g1544 546 SMART uim 136 155 IPR003903 -
Gso1g1544 546 Pfam LIM domain 177 232 IPR001781 -
Gso1g1544 546 MobiDBLite consensus disorder prediction 466 492 - -
Gso1g1544 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 260 - -
Gso1g1544 546 Gene3D Cysteine Rich Protein 171 235 - -
Gso1g1544 546 CDD LIM_DA1 177 229 - -
Gso1g1544 546 SMART lim_4 176 228 IPR001781 -
Gso1g1544 546 Coils Coil 123 143 - -
Gso1g1544 546 MobiDBLite consensus disorder prediction 466 488 - -
Gso1g1544 546 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 136 155 IPR003903 -
Gso1g1544 546 PANTHER PROTEIN DA1-RELATED 2 114 546 IPR045218 -
Gso1g1544 546 PANTHER PROTEIN DA1-RELATED 2 1 121 IPR045218 -
Gso1g1544 546 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 121 - -
Gso1g1544 546 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 114 546 - -
Gso1g1544 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 202 - -
Gso1g1544 546 ProSitePatterns LIM zinc-binding domain signature. 177 211 IPR001781 -
Gso1g1544 546 Pfam Protein DA1 326 541 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1544 Gso-Chr1 52097677 52105394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso1g1544 DA1-like 6.1e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1544 - - gmx:100817969 1108.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1544 1 52097677 52105394 Gso11g0531 11 4765654 4772170 GST
Gso1g1544 1 52097677 52105394 Gso2g0502 2 5301557 5307911 PCT
Gso1g1544 1 52097677 52105394 Gso16g1144 16 30409024 30415333 PCT
Gso2g0502 2 5301557 5307911 Gso1g1544 1 52097677 52105394 PCT
Gso16g1144 16 30409024 30415333 Gso1g1544 1 52097677 52105394 PCT