Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1540 ATGGAAGCTCAAGCGTCGTTCTTGTTTATTAGCTTGTTTTTCTCTCTGGTGTTGCATTTGCTTGCAAAGCATTATTACAAGCCAAAAACCACCCTTTCTCACAAACTACCCCCGGGACCAAAGAAGCTACCTCTGATAGGGAACCTGCATCAACTAGCAATGGCTGGTTCACTTCCACATCGTACTCTCCGAGACCTTGCCCTTAAATACGGACCTCTCATGCATCTCCAACTTGGTGAAATTTCTTCCGTGGTTGTATCCTCCCCCAACATGGCCAAGGAGATAATGAAAACCCATGATCTTGCTTTTGTGCAGAGGCCACAATTTCTTCCTGCTCAAATTTTGACCTATGGGCAAAATGATATTGTTTTTGCTCCATATGGGGATTATTGGAGACAAATGAAGAAAATATGTGTCTCGGAGCTTCTAAGTGCCAAGAGAGTTCAGTCTTTCTCTCATATTAGAGAAGACGAGACATCCAAATTTATAGAATCAATTCGAATATCAGAAGGTTCACCAATCAATCTTACTAGTAAAATTTACTCCTTGGTAAGTTCTTCTGTTTCCAGGGTAGCATTTGGCGACAAATCTAAGGACCAGGAAGAGTTTTTGTGTGTGCTTGAAAAAATGATATTAGCGGGGGGAGGATTTGAACCTGACGATTTGTTTCCTTCGATGAAACTTCATCTCATAAATGGAAGGAAGGCCAAATTGGAGAAGATGCATGAGCAGGTTGACAAGATCGCAGACAACATTCTCAGAGAGCATCAAGAAAAGCGCGAAAGGGCACTACGAGAAGGCAAGGTTGACCTAGAGGAGGAGGATCTTGTTGATGTTCTTTTGAGAATCCAACAAAGTGACAACCTCGAGATCAAAATTAGTACCACAAACATCAAAGCTGTTATATTGGACGTATTTACTGCTGGAACGGATACTTCAGCATCAACACTTGAATGGGCTATGGCAGAAATGATGAGAAACCCAAGAGTGAGGGAGAAAGCACAGGCTGAAGTAAGACAAGCATTTAGGGAATTGAAAATAATCCATGAAACAGATGTAGGGAAACTTACATACTTAAAGTTGGTGATCAAAGAGACATTAAGGTTACACGCTCCTTCTCCTTTATTGGTCCCTAGAGAATGCTCTGAACTAACCATCATTGATGGATATGAAATACCAGTCAAGACTAAAGTCATGATAAACGTGTGGGCAATTGGAAGAGATCCCCAATATTGGACTGATGCTGAGAGGTTTGTCCCAGAGAGATTCGATGGTAGTTCTATCGATTTCAAAGGGAATAACTTTGAGTATCTTCCTTTTGGGGCAGGAAGGAGAATGTGCCCAGGAATGACATTTGGTTTAGCCAACATTATGCTTCCACTCGCTCTATTACTCTATCACTTCAATTGGGAACTTCCAAATGAGATGAAACCTGAGGATATGGATATGTCTGAAAACTTTGGATTGACAGTTACAAGGAAAAGCGAGTTGTGTTTGATTCCCATTGTTAATGATCTTTGA 1521 0.4116 MEAQASFLFISLFFSLVLHLLAKHYYKPKTTLSHKLPPGPKKLPLIGNLHQLAMAGSLPHRTLRDLALKYGPLMHLQLGEISSVVVSSPNMAKEIMKTHDLAFVQRPQFLPAQILTYGQNDIVFAPYGDYWRQMKKICVSELLSAKRVQSFSHIREDETSKFIESIRISEGSPINLTSKIYSLVSSSVSRVAFGDKSKDQEEFLCVLEKMILAGGGFEPDDLFPSMKLHLINGRKAKLEKMHEQVDKIADNILREHQEKRERALREGKVDLEEEDLVDVLLRIQQSDNLEIKISTTNIKAVILDVFTAGTDTSASTLEWAMAEMMRNPRVREKAQAEVRQAFRELKIIHETDVGKLTYLKLVIKETLRLHAPSPLLVPRECSELTIIDGYEIPVKTKVMINVWAIGRDPQYWTDAERFVPERFDGSSIDFKGNNFEYLPFGAGRRMCPGMTFGLANIMLPLALLLYHFNWELPNEMKPEDMDMSENFGLTVTRKSELCLIPIVNDL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1540 506 Coils Coil 254 274 - -
Gso1g1540 506 Pfam Cytochrome P450 37 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 Gene3D Cytochrome P450 30 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PANTHER OS08G0105600 PROTEIN 3 505 - -
Gso1g1540 506 PANTHER CYTOCHROME P450 71D8 3 505 - -
Gso1g1540 506 SUPERFAMILY Cytochrome P450 37 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Gso1g1540 506 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Gso1g1540 506 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1540 Gso-Chr1 52061836 52064315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1540 9 501 Cytochrome P450 AT3G26300 42.942 4.98e-136 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1540 - K15472 gmx:100816377 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1540 1 52061836 52064315 Gso11g0534 11 4795283 4798318 GST