Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1538 ATGGCTGTCTTATTTTCCTTTCTTCCGCTCCGTTCTCAGATTCTTTGTCTTGTACTTATGTTGTTTTTCACTAATATTGTAGCTCAATCACAACAGACCAATGAAACAAACTTTTCATGCCCTTCTGATTCACCACCGCCTTCATGTGAAACCTATGTAACATACATTGCTCAGTCTCCAAATTTTTTGAGTCTAACCAGCATATCCAATATATTTGACACAAGTCCTTTATCCATTGCAAGAGCAAGTAACTTAGAGCCTGAAGACGACAAGCTGATCGCAGACCAAGTCTTACTGATACCAGTAACCTGTGGTTGCACTGGAAACCGTTCTTTCGCCAATATCTCCTATGAGATCAACCCAGGTGATACCTTCTACTTTGTTGCAACCACTTCATACGAGAATCTCACGAATTGGCGTGTAGTGATGGATTTAAACCCCAGTCTAAGTCCAAATACGTTGCCAATAGGAATCCAAGTAGTATTTCCTTTATTCTGCAAGTGTCCTTCAAAGAACCAGTTGGACAAAGGGATAAAGTACCTGATTACATACGTGTGGCAGCCCAGTGACAATGTTTCCCTTGTAAGTGAAAAGTTTGGTGCATCACCAGAGGACATATTGAGTGAAAACAACTATGGTCAGAACTTTACTGCTGCAAACAACCTTCCAGTTCTGATCCCAGTGACACGCTTGCCTGTTCTTGCTCAATTTCCTTCAGATGTAAGAAAAGGCGGAATTCGTCTTCCAGTTATAATTGGTATTAGCTTGGGATGCACGCTACTGGTCGTGGTTTTAGCAGTATTACTGGTGTATGTATATTGTCTGAAAATTAAGAGTTTGAATAGGAGTGCTTCATCAGCTGAAACTGCAGATAAACTACTTTCTGGAGTTTCAGGCTATGTAAGTAAGCCTACCATGTATGAAACTGATGCGATCATGGAAGCTACCATGAACCTCAGTGAGAAGTGCAAGATTGGGGAATCAGTGTACAAGGCAAACATAGAGGGTAAGGTTTTGGCAGTAAAAAGATTCAAGGAAAATGTCACAGAGGAGTTGAAAATTCTGCAGAAGGTGAATCATGGAAATCTGGTGAAATTAATGGGTGTCTCGTCAGACAATGATGGAAATTGTTTTGTGGTTTATGAATATGCTCAAAATGGATCTCTTGATGAGTGGCTATTCTACAAGTCTTGTTCAGACACATCAGACTCAAGGGCCTCCCTTACATGGTGTCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTTTGCAGTACATGCATGAACATGCATATCCAAGAATAGTCCACAGGGACATCGCAAGCAGCAATATCCTTCTTGACTCAAACTTCAAGGCCAAGATAGCAAATTTCTCCATGGCCAGAACTTTTACCAACCCCACGATGCCAAAGATAGATGTCTTTGCATTTGGGGTGGTTCTGATAGAGTTGCTTACTGGTAGGAAAGCCATGACAACCAAGGAAAATGGTGAGGTAGTTATGCTGTGGAAGGACATTTGGAAGATCTTTGATCAAGAAGAGAATAGAGAGGAGAGGCTCAAAAAATGGATGGATCCTAAGTTAGAGAGTTATTATCCTATAGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGTACAGCAGATAAGTCTTTGTCCAGATCAACCATTGCAGAAATTGTCCTTAGCCTCTCCCTTCTCACTCAACCATCTCCTGCGACATTGGAGAGATCCTTGACTTCTTCTGGATTAGATGTAGAAGCTACTCAAATTGTCACTTCCATAGCAGCTCGTTGA 1800 0.4156 MAVLFSFLPLRSQILCLVLMLFFTNIVAQSQQTNETNFSCPSDSPPPSCETYVTYIAQSPNFLSLTSISNIFDTSPLSIARASNLEPEDDKLIADQVLLIPVTCGCTGNRSFANISYEINPGDTFYFVATTSYENLTNWRVVMDLNPSLSPNTLPIGIQVVFPLFCKCPSKNQLDKGIKYLITYVWQPSDNVSLVSEKFGASPEDILSENNYGQNFTAANNLPVLIPVTRLPVLAQFPSDVRKGGIRLPVIIGISLGCTLLVVVLAVLLVYVYCLKIKSLNRSASSAETADKLLSGVSGYVSKPTMYETDAIMEATMNLSEKCKIGESVYKANIEGKVLAVKRFKENVTEELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAQNGSLDEWLFYKSCSDTSDSRASLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDIASSNILLDSNFKAKIANFSMARTFTNPTMPKIDVFAFGVVLIELLTGRKAMTTKENGEVVMLWKDIWKIFDQEENREERLKKWMDPKLESYYPIDYALSLASLAVNCTADKSLSRSTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEATQIVTSIAAR* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1538 599 Gene3D Transferase(Phosphotransferase) domain 1 384 467 - -
Gso1g1538 599 Gene3D Transferase(Phosphotransferase) domain 1 468 578 - -
Gso1g1538 599 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 20 599 - -
Gso1g1538 599 Pfam LysM domain 64 101 IPR018392 -
Gso1g1538 599 Pfam Protein tyrosine and serine/threonine kinase 344 465 IPR001245 GO:0004672|GO:0006468
Gso1g1538 599 ProSiteProfiles LysM domain profile. 53 100 IPR018392 -
Gso1g1538 599 SMART tyrkin_6 319 565 IPR020635 GO:0004713|GO:0006468
Gso1g1538 599 ProSiteProfiles Protein kinase domain profile. 287 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1538 599 Gene3D Phosphorylase Kinase; domain 1 297 383 - -
Gso1g1538 599 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 599 - -
Gso1g1538 599 SUPERFAMILY Protein kinase-like (PK-like) 307 565 IPR011009 -
Gso1g1538 599 ProSitePatterns Tyrosine protein kinases specific active-site signature. 435 447 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1538 Gso-Chr1 52043453 52046173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1538 83 568 Receptor kinase-like Gene Family AT3G21630 30.684 2.86e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso1g1538 PK_Tyr_Ser-Thr 3.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1538 - - gmx:102669100 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1538 1 52043453 52046173 Gso11g0537 11 4825044 4827193 GST