Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1536 ATGGTCTCTCATGGTATCAATTCTATCCTTTGGCACTTTATTTTGGTTATTGTCATTGTTGCCCTTTTCACTCCAACCCTTAGTGCCGCAAAACAATCTAAAATAAATGGCCTAAAAATGAATGTAATTGATCGATGTTGGAGACTGAATCCTGAATGGAGGAGGCATCGACCTCAACTAGCAACATGTTCCGTTGGTTACACTGGCAAGATGACAAACAACATTGGAGATGACCTCATCCATTATAAAGTTATTGATCCTAGTGATGATCCTATAAACCCTAAATCTGGAACTTTGAGGTATGGAGCTTCAGTAATTCAAGGTAAAGTGTGGATCACATTTCAAAGAGACATGCACATTAAGCTTGAGAGACCCCTTCTTATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTTCACATTGCTGACAATGCATGCATAATGATCTTTAAGGCCACCAATATAATCATCCATGGCATTCGGGTTCATCATTGCAAACCTCAAGCCCCAGGGATCGTGATGGGACCTGAAGGAAAGGTGGTTCCTTTAGGCCAGGTAGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACACTTTATAATTGTCAAGATGGTCTACTAGATGTAACACGAGGTTCCACTGATGTGACTATATCCAATAACTGGTTTAGAGACCAAGACAAGGTTATGCTTCTTGGGCACGATGATGGATATGTGAGAGACCAAAACATGAAGATCACTGTTGTGTACAATCACTTTGGACCTAATTGTAATCAGCGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATTTGTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAACAGGGAGTAAAGAGGTGACATGGAGAAAAAATAGTCATAAAAATGGAGATATATGGGAATTTCATTCAGTGAGAGATGCTTTTGAAAATGGAGCCTCCTTTGCAGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGCAAGGAACAATGCTTTAAAGTTGTTAATGTCAACTCCGTTAGATCATTGACAAGCTCATCAGGTGTTTTACAATGCACTAAAACTTCTATATGTTGA 1176 0.4005 MVSHGINSILWHFILVIVIVALFTPTLSAAKQSKINGLKMNVIDRCWRLNPEWRRHRPQLATCSVGYTGKMTNNIGDDLIHYKVIDPSDDPINPKSGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVHIADNACIMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVVPLGQVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYVRDQNMKITVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPTTGSKEVTWRKNSHKNGDIWEFHSVRDAFENGASFAVTKGGRVPKPNYSKEQCFKVVNVNSVRSLTSSSGVLQCTKTSIC* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1536 391 Gene3D - 40 384 IPR012334 -
Gso1g1536 391 Pfam Pectate lyase 128 308 IPR002022 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Gso1g1536 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Gso1g1536 391 SUPERFAMILY Pectin lyase-like 33 383 IPR011050 -
Gso1g1536 391 PANTHER PECTATE LYASE 2 388 - -
Gso1g1536 391 PANTHER PECTATE LYASE 18-RELATED 2 388 IPR045032 GO:0030570
Gso1g1536 391 SMART amb_all 117 314 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1536 Gso-Chr1 52025309 52026840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1536 71 318 Polysaccharide Lyase AT5G09280 70.161 1.19e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1536 K01728 - gmx:100780437 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1536 1 52025309 52026840 Gso11g0539 11 4833822 4835347 GST