Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1524 ATGAATCATCGACAACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTACTCCCTGCTGATGCATACACTCAAATTATTGCTCAACAAGGAGACACTAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGCTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGATGACCAAGTTAATCTCCTTGAACAAAACTTTGGAAATGAACACAAACTTGAGTCCGAGAGAAAGGACAGGCTGGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAGTTGGAAGAAGAGTACTCCAACCTTAAAAAAAATCATGAAGCCACCTTGCTCGAGAAATGTCGCCTAGAGACTGAGGTGTTGAAGCTCAAAGAGCAACTTTCTGAGGCAGAGAAAGAGATTCAGAGGCTGCTAGAGAGTGCTGAGAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAGTCAATGGAAGCGGTGGACCCACCATTCTTTGGAGAATTTGGAGTTGATGGATATGAGGATGATGTGTTTTACGTGCCTGAGATCCATTACATCAACGGCATGGAATGGATTAATCTGTATATGTAA 645 0.4434 MNHRQPFQDHMMLMSQLLPADAYTQIIAQQGDTKKPRRRRNKKNKGGENAASEANKKRKLSDDQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKNHEATLLEKCRLETEVLKLKEQLSEAEKEIQRLLESAERVPSNSSSSSQSQSMEAVDPPFFGEFGVDGYEDDVFYVPEIHYINGMEWINLYM* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1524 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Gso1g1524 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Gso1g1524 214 MobiDBLite consensus disorder prediction 157 176 - -
Gso1g1524 214 SUPERFAMILY Homeodomain-like 55 120 IPR009057 -
Gso1g1524 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Gso1g1524 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Gso1g1524 214 MobiDBLite consensus disorder prediction 28 61 - -
Gso1g1524 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 213 - -
Gso1g1524 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 213 IPR045224 GO:0003700
Gso1g1524 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Gso1g1524 214 Gene3D - 47 119 - -
Gso1g1524 214 Coils Coil 103 162 - -
Gso1g1524 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Gso1g1524 214 MobiDBLite consensus disorder prediction 159 176 - -
Gso1g1524 214 MobiDBLite consensus disorder prediction 45 61 - -
Gso1g1524 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1524 Gso-Chr1 51916500 51918794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1524 10 214 Homeobox Transcription Factor Family AT4G36740 58.879 3.42e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso1g1524 Homeodomain 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1524 K09338 - gmx:100809616 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1524 1 51916500 51918794 Gso11g0551 11 4951548 4953822 GST
Gso1g1524 1 51916500 51918794 Gso2g0492 2 5194151 5195990 PCT
Gso2g0492 2 5194151 5195990 Gso1g1524 1 51916500 51918794 PCT