Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1521 ATGAGAGTTCCCGTTCCCTCATCCCCACAGGCCAACCCAAAACCCACCAATAACGTTGTCCGTACCATTGCCCTTCCCAACCTCAACAATAGCACCACGCCCCCCACGGGCCTGTGCTACGAGCCCACTTCTGTCCTTGACCTGTGCCGGAGCCCGAGCCCGGGCACCGAAAAGCCCACCACCGATCACTCCGTTCTCGTCACCAACTCCCAAGACTATCTCGACCTGGAAGACCATGCGTTGCACAACTTGGACTGGGACTCCATCATGAAGGACTTGGGCTTACACGACGACTCCGCCACCCCCGTTTTGAAAACTTTTCTCCACCCCGACGACGACGACGACGACGACAACAACAACAACCCATCATGCGACGACTTCACACTCTTCGACCACGCGCTTGAATTCACCACTCTCTCCGACATCTACTCCAACCAAAACTTCGCTTTCGATTTCAACCACTTGCCTCACGACTTCAACCACCTCAACGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCCGACTGCTTCGACACCAAGCAGTTACACGTGGCGCAAGTGATATTGGAGCGGCTCAATCAACGACTACGATCGCCCGTCGGAAAACCACTCCATCGCGCAGCGTTTTACCTCAAAGAAGCTCTCCAGAGTCTTCTCTCCGGTTCGAACCGGACTCCGAGGATTTCATCCCTGGTGGAAATCGTGCACAGTATCAGAACCTTCAAGGCCTTTTCGGGAATTTCGCCGATCCCAATGTTCTCGATCTTCACCACCAATCAAATAGTTCTGGATCACGCGGCGAGCTCCTTCATGCACGTCATCGACTTCGACATCGGTCTTGGGATCCAATACGCTTCCCTAATGAAGGAGATTGCGGAGAAGGCGGCGGATTCGCCGGTGCTCCGAATCACCGCCGTCGTTCCGGAAGAATACGCCGTCGAGAGCACGCTCGTCCGCGACAACCTCGCGCAGTTCGCCCTAGATCTCAGGATCCGCGTGCAGGTCGAGTTCGTGCCGCTTCGAACCTTCGAGAATCTCTCCTTCAAGGCCGTGAAGTTCGTCAACGGCGAGAACACCGCCGTGCTCCTGTCGCCGGCGATTTTTCGCCACCTCGGCAACGCCGCCGCGTTCCTGGGGGACGTGCGGAGGATCTCGCCGAGCGTGGTGGTTTTTGTGGACGGCGAGGGGTGGGCGGAGACTGCCACGGCGTCGGCGGCGTCGTTCCGGCGCGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGCTGGAGTCGCTGGACGCGTCGACGGTGGGAGGGGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCAGCTGCGGCCGAAGATTTTGGCGGCGGTGGAGAGTGCGTGGCGGCGGGTTCCGCCGTGGAGGGAGGCGTTTTACGGCGCCGGAATGAGGCCGGTGCAGTTAAGCCAGTTTGCGGATTTTCAAGCAGAGTGCCTGTTAGCGAAGTCTCAAATCAGAGGCTTTCACGTGGCAAAACGCCAGAACGAACTGGTGCTTTTCTGGCATGATAGGGCCATTGTTGCCACGTCAGCATGGCGCTGTTAG 1578 0.5792 MRVPVPSSPQANPKPTNNVVRTIALPNLNNSTTPPTGLCYEPTSVLDLCRSPSPGTEKPTTDHSVLVTNSQDYLDLEDHALHNLDWDSIMKDLGLHDDSATPVLKTFLHPDDDDDDDNNNNPSCDDFTLFDHALEFTTLSDIYSNQNFAFDFNHLPHDFNHLNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLHRAAFYLKEALQSLLSGSNRTPRISSLVEIVHSIRTFKAFSGISPIPMFSIFTTNQIVLDHAASSFMHVIDFDIGLGIQYASLMKEIAEKAADSPVLRITAVVPEEYAVESTLVRDNLAQFALDLRIRVQVEFVPLRTFENLSFKAVKFVNGENTAVLLSPAIFRHLGNAAAFLGDVRRISPSVVVFVDGEGWAETATASAASFRRGVVSSLEYYSMMLESLDASTVGGGGEWVRRIEMMQLRPKILAAVESAWRRVPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKRQNELVLFWHDRAIVATSAWRC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1521 525 Pfam GRAS domain family 168 524 IPR005202 -
Gso1g1521 525 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 524 IPR005202 -
Gso1g1521 525 ProSiteProfiles GRAS family profile. 158 524 IPR005202 -
Gso1g1521 525 PANTHER SCARECROW-LIKE PROTEIN 15 6 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1521 Gso-Chr1 51895737 51897781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1521 73 524 GRAS Transcription Factor Family AT4G36710 55.745 6.06e-166 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso1g1521 GRAS 3.9e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1521 - - gmx:100807470 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1521 1 51895737 51897781 Gso11g0554 11 4971250 4973272 GST
Gso1g1521 1 51895737 51897781 Gso2g0490 2 5178375 5180457 PCT
Gso1g1521 1 51895737 51897781 Gso16g1133 16 30199308 30201479 PCT
Gso2g0490 2 5178375 5180457 Gso1g1521 1 51895737 51897781 PCT
Gso16g1133 16 30199308 30201479 Gso1g1521 1 51895737 51897781 PCT