Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1516 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCTGACAGTGCCCCCAAAACCCACAACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCCACGAACCGTTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAACCTTCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGAAAGAGGGTGTACGTGTGTCCCGAACCAACGTGCGTTCACCACGATCCTTCTAGAGCGTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCAGAGTCAGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCGGTGGCGGTGGAGGCTCCGCCGCCACTTGTACCGCCTGTTAGTTCTCAGTCAAACAGTGTTGTTGTACCATCATCTAGCTTGCAGACACAAAAACCAGAGTTGCCTGAAAATTCCCCACAAATCATAGAAGAACCAAAGGTCAATACTGCTATGAATGGGAGCTGTAGCAGTACCAGTACCAGCACTACCAGCTCAACAAGCAACAGCAACAGTGGTGCTAGCAGCAGTGTATTTGCAAGCTTGTTTGCCTCATCATCAGCATCCGCAACTGCAAGCCTCCACTCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGGCATCCGGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCAGAGCCCATTTCTCTGTGCCTAGCCACCAATCATGGCTCATCCATTTTTGGAACGGGAAGGCAGGAACGCCGTCAGTATGCCCCACCACCACAGCCAGCCATGTCTGCCACTGCATTGCTGCAGAAAGCCGCCCAAATGGGTGCAGCTGCAACAAATGCCTCTTTTCTTCGTGGGTTAGGCATTGTATCATCTTCTGCATCAACGTCATCAGTTCAGCAAGATAATTTGCAATGGGGCCATCAGCCAGTGGAACCAGAGAGTGCCTCAGTTCCTGCAGGTCTTGGACTTGGGCTTCCCTGCGACAGTAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCCATGTTTGGTCCAAAGCAAACCACCCTCGATTTTCTCGGGTTGGGGATGGCTGCTGGGGGCACCCCTGGTGGAGGCTTATCGGCACTCATCACCTCCATTGGTGGTGGTCTGGATGTTACTACTGCGGCGGCATCCTTTGCTAGTGGAGAATTCCCTGGCAAAGATATTGGAAGGAGGAGCACTTGA 1554 0.5199 MPVDLDNVSTASGEASVSSSGNLTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPVAVEAPPPLVPPVSSQSNSVVVPSSSLQTQKPELPENSPQIIEEPKVNTAMNGSCSSTSTSTTSSTSNSNSGASSSVFASLFASSSASATASLHSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGRQERRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSSASTSSVQQDNLQWGHQPVEPESASVPAGLGLGLPCDSSSGLKELMMGTPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTTAAASFASGEFPGKDIGRRST* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1516 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 516 - -
Gso1g1516 517 Gene3D Classic Zinc Finger 115 195 - -
Gso1g1516 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Gso1g1516 517 MobiDBLite consensus disorder prediction 1 42 - -
Gso1g1516 517 MobiDBLite consensus disorder prediction 195 214 - -
Gso1g1516 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 516 - -
Gso1g1516 517 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Gso1g1516 517 MobiDBLite consensus disorder prediction 233 292 - -
Gso1g1516 517 MobiDBLite consensus disorder prediction 195 292 - -
Gso1g1516 517 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Gso1g1516 517 Gene3D Classic Zinc Finger 41 107 - -
Gso1g1516 517 MobiDBLite consensus disorder prediction 9 29 - -
Gso1g1516 517 SMART c2h2final6 137 157 IPR013087 -
Gso1g1516 517 SMART c2h2final6 102 132 IPR013087 -
Gso1g1516 517 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1516 Gso-Chr1 51858660 51862425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1516 1 516 IDZ Gene Family AT5G66730 59.091 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g1516 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1516 K25869 - gmx:100806404 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1516 1 51858660 51862425 Gso2g0488 2 5156542 5160000 PCT
Gso1g1516 1 51858660 51862425 Gso16g1131 16 30155496 30159124 PCT
Gso2g0488 2 5156542 5160000 Gso1g1516 1 51858660 51862425 PCT
Gso16g1131 16 30155496 30159124 Gso1g1516 1 51858660 51862425 PCT