Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1515 ATGCATCGCTGTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGCACATGTGGTATGTTTCACAGCCAAACCAGCTCCTTCTCCGTGCTCTTCTCCATGCCCAACCACAAACCACCCTACGACCATTCCGACAACATCTATGACTATTCTTCCTTCACTCCCTCTTCCTCTTCCGTTGACTGCACCCTCTCCCTCGGTACCCCTTCCACCCGCTTCTCCGAAGACGAAGAAAAGCGAAGCTGCCACGAACCCCGCTCCGTCTCGAACTTCTGCTGGGACTTACTACAATCTAAACACAACCACCCTCAATCCCATTCCAAATCCTCCCGAACCACCAACACCACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGACACCACTTCTACTCCCCTCTGGAGAAATGGCCCCCGTGGCCCCAAGTCACTATGCAATGCGTGTGGGATTAGATACAAGAAGGAAGAGCGAAGAGCGAGTGCGGCCGCCGCCACGCCGCCGGCTGCGGCGGCTTCCGGCGGCATGATGGATTCGGCGCAGGTGTACAATAACTCATGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAGCGAGTTCCGTTTCGTGGATGACGGCGATCGAGACGCCGCTGATAACGGCATTCAGTTTCTCTCGTGGAGACTCGACGTCACAGACAGGACGAGCCTCGTTCACGACTTCACGAGATGA 732 0.5724 MHRCCSGSQGHVMGPCTCGMFHSQTSSFSVLFSMPNHKPPYDHSDNIYDYSSFTPSSSSVDCTLSLGTPSTRFSEDEEKRSCHEPRSVSNFCWDLLQSKHNHPQSHSKSSRTTNTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATPPAAAASGGMMDSAQVYNNSWYAHQQSQKMQCFSPGMGSEFRFVDDGDRDAADNGIQFLSWRLDVTDRTSLVHDFTR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1515 243 CDD ZnF_GATA 123 155 IPR000679 GO:0006355|GO:0043565
Gso1g1515 243 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Gso1g1515 243 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Gso1g1515 243 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Gso1g1515 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 165 - -
Gso1g1515 243 Gene3D - 120 195 IPR013088 GO:0006355|GO:0008270
Gso1g1515 243 PANTHER GATA TRANSCRIPTION FACTOR 18 1 242 IPR044272 GO:0003700|GO:0009908
Gso1g1515 243 SMART GATA_3 118 169 IPR000679 GO:0006355|GO:0043565
Gso1g1515 243 PANTHER GATA TRANSCRIPTION FACTOR 18 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1515 Gso-Chr1 51830196 51832141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1515 17 243 C2C2-Gata Transcription Factor Family AT3G50870 42.069 3.07e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso1g1515 GATA 6.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1515 - - gmx:100790571 439.499