LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso1g1502	ATGTCTTCTCCACATAACTCTTCTCCTGATAATGAAACCCCGGATAACTCCACCCCTGATGACGCTGACAACTCATCTTCACCATCATCACAATCACCACCTCCATCATCACCACCGCCATCATCACCACCTCCATCATCGCCACCACCATCGTCACCACCTCCGTCGTCACCACCGCCATCTTCTTCATCATCGCCACCACCCTCGTCGCCTCCACCATCATCTTCATCATCACCACCCTCTCCTTCCCCTCCAACATCAAACAATCCAAGCCCTCCATCACCTAATGGGTCCTCACAGTCACCTTCTCCACCCGGATCATCACGTTCTCCGCCCTCCTTTGAATCACCGTCTCCTCCACACAAATCTTTAGATTCTCCACCGTCCTCAAGGAACTCTGGCAGTGGCAGTGACAGTGGCAGCCGTGATAGCAATGGCGGTGGCGGTGACGACAGCAGCAAGGCCATAGTTGGAGCAGTGCTTGGCATAGGAAGCGTGCTTCTTATTTTGGTCATTGTTTGCGTTGTTTGCTCCAGGAAGAAGAAGAAGAATAGAATGTACTATTATGCAGGAGAGCAATCCATGGGAAAAGGGAATAATAATAACTATTACAATAGCGGGCAACACCCAAATTATTACGGAGGTCCACATGGGGACCATGTTGTGAGGATGCAACAAAATGGAATGGGTCCTGGTGGCGGAGGGTGGGGTGCACCACCACCACCTCCTCCAATGATGATGAGTAGTGCTGAGTTTAGCTCCAATTACTCGACGGGACCGGCCCCGTTGCCTCCTCCCTCACCAAACCTTGCTCTGGGCCTCAAAGGGGGCACCTTCACTTACGAGGAATTAGCAGCTGCCACCAACGGATTCAATGATGCAAATTTGATAGGACAAGGTGGATTCGGCTATGTCCATAAGGGTGTGTTGCCTAGTGGAAAGGAAGTGGCAGTTAAGAGTCTTAAAGCAGGTAGTGGCCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGCGTCCATCATCGCCATCTCGTGTCACTTGTTGGATACTCAATTTCTGGTGGCCAGAGGATGTTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGGAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTGTCATCCTCGTATTATCCATCGCGATATCAAAGCTGCAAATGTCCTTATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGAGTCATGCTATTGGAACTCATAACTGGGAAGCGACCTGTTGATCACACAAATGCCATGGACGACAGCCTAGTAGACTGGGCTCGACCACTTCTGACTCGTGGACTAGAGGAGGATGGCAACTTTGGAGAGTTGGTTGATGCATTTTTAGAGGGAAACTACGATCCTCAAGAACTGTCAAGAATGGCAGCTTGTGCTGCCGGTAGCATTCGTCATTCTGCCAAAAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTCTCACTGGATGACTTGAAAGATGGGATTAAGCCGGGGCAAAATGTTGCTTACAACTCTTCATCTAGCTCAGATCAGTATGACACAATGCAATACAATGCTGATATGCAGAAGTTCAGAAAGGCAGTGTTTTCTAATAGCGAGGAATTTGGCACCAGCAGTGGCTCCAGTGGTGAAGTAAGCCAGAAGCAGCAACGGCTCTAG	1905	0.4824	MSSPHNSSPDNETPDNSTPDDADNSSSPSSQSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSSSSPPPSSPPPSSSSSPPSPSPPTSNNPSPPSPNGSSQSPSPPGSSRSPPSFESPSPPHKSLDSPPSSRNSGSGSDSGSRDSNGGGGDDSSKAIVGAVLGIGSVLLILVIVCVVCSRKKKKNRMYYYAGEQSMGKGNNNNYYNSGQHPNYYGGPHGDHVVRMQQNGMGPGGGGWGAPPPPPPMMMSSAEFSSNYSTGPAPLPPPSPNLALGLKGGTFTYEELAAATNGFNDANLIGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNAMDDSLVDWARPLLTRGLEEDGNFGELVDAFLEGNYDPQELSRMAACAAGSIRHSAKKRPKMSQIVRILEGDVSLDDLKDGIKPGQNVAYNSSSSSDQYDTMQYNADMQKFRKAVFSNSEEFGTSSGSSGEVSQKQQRL*	635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso1g1502	634	Gene3D	Phosphorylase Kinase; domain 1	271	366	-	-
	Gso1g1502	634	MobiDBLite	consensus disorder prediction	31	124	-	-
	Gso1g1502	634	MobiDBLite	consensus disorder prediction	1	150	-	-
	Gso1g1502	634	MobiDBLite	consensus disorder prediction	1	30	-	-
	Gso1g1502	634	PRINTS	Proline rich extensin signature	7	19	-	-
	Gso1g1502	634	PRINTS	Proline rich extensin signature	28	49	-	-
	Gso1g1502	634	PRINTS	Proline rich extensin signature	53	69	-	-
	Gso1g1502	634	PRINTS	Proline rich extensin signature	72	89	-	-
	Gso1g1502	634	ProSiteProfiles	Protein kinase domain profile.	291	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso1g1502	634	MobiDBLite	consensus disorder prediction	615	634	-	-
	Gso1g1502	634	Pfam	Protein tyrosine and serine/threonine kinase	296	496	IPR001245	GO:0004672\|GO:0006468
	Gso1g1502	634	Gene3D	Transferase(Phosphotransferase) domain 1	367	575	-	-
	Gso1g1502	634	PANTHER	RECEPTOR-LIKE KINASE	47	627	-	-
	Gso1g1502	634	SUPERFAMILY	Protein kinase-like (PK-like)	273	564	IPR011009	-
	Gso1g1502	634	MobiDBLite	consensus disorder prediction	125	148	-	-
	Gso1g1502	634	SMART	serkin_6	291	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso1g1502	634	ProSitePatterns	Protein kinases ATP-binding region signature.	297	319	IPR017441	GO:0005524
	Gso1g1502	634	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	47	627	-	-
	Gso1g1502	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	411	423	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso1g1502	Gso-Chr1	51683079	51687568	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso1g1502	144	611	Trihelix Transcription Factor Family	AT1G70460	51.046	7.29e-153	456

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Gso1g1502		PK_Tyr_Ser-Thr	2.5e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso1g1502	-		-	gmx:100777163	893.264