Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1497 ATGGCAATGAGAGGGCAACAAGATAAGGAAATAGAGATACCAACCACAACCACAACCACTTTAGGTTACAACCTTCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGCAGTGATCATGATCATCAAACTCACACATTGATCTTCAACGAAACACCTCACCATAATCTCTATCCACCACCTCCTTCTCTTGCACCGCCTCAACCTCAAAGACCCACATTAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACCCCCCAAGAACCTCGACCCCATCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGACGGCTGCGGGGAGTTCATGGCAAGTGGAGAAGAAGGCACGCCGGAATCACTAAGATGCGCGGCGTGCGAGTGCCACCGCAGCTTCCACAGAAAAGAAGTTGAAGGAGAATTACAACCGCAATCGCTACCACAACAACATGTTCCAAATTACCACAGCTACTACACCAACAAGCACAACGGTCACTTTCACTACCCTACACCCTCTTCTTCATCCCTTCATCATAGATTGGTTGCCACTACTACCGCCACACCGAGCTTGGTCCCCCCAGTGATGATGGCCTTCGGAGGCCCAGCTGAGTCATCTAGTGAAGATCTCATCAACAACACTGGAGCCCAGTTATCAGTGCAGCAGCAGGCACCACTAACACACTCTTCCAACAAGAAGAGGTTCAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATTGATTGGAAGATCCAGAAACACAATGAGCAGGAGGTACAGCACTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACTAGTAGTAGTAAGAAGCAGCAAATGTAA 960 0.4865 MAMRGQQDKEIEIPTTTTTTLGYNLLPNRDSSSSSSKLSSPTVGERSSSDHDHQTHTLIFNETPHHNLYPPPPSLAPPQPQRPTLDPDLSTPIAPTSNPPRTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRSFHRKEVEGELQPQSLPQQHVPNYHSYYTNKHNGHFHYPTPSSSSLHHRLVATTTATPSLVPPVMMAFGGPAESSSEDLINNTGAQLSVQQQAPLTHSSNKKRFRTKFSQHQKDRMMEFADKIDWKIQKHNEQEVQHFCSQVGVKRQVFKVWMHNNKQTSSSKKQQM* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1497 319 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 313 - -
Gso1g1497 319 SUPERFAMILY Homeodomain-like 247 311 IPR009057 -
Gso1g1497 319 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 51 313 - -
Gso1g1497 319 MobiDBLite consensus disorder prediction 1 106 - -
Gso1g1497 319 MobiDBLite consensus disorder prediction 90 106 - -
Gso1g1497 319 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 108 159 IPR006456 -
Gso1g1497 319 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 109 158 IPR006456 -
Gso1g1497 319 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 310 IPR006455 -
Gso1g1497 319 Pfam ZF-HD protein dimerisation region 107 159 IPR006456 -
Gso1g1497 319 MobiDBLite consensus disorder prediction 10 45 - -
Gso1g1497 319 Gene3D - 239 315 - -
Gso1g1497 319 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1497 Gso-Chr1 51633198 51635293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1497 89 315 ZF-HD Transcription Factor Family AT2G18350 48.927 1.40e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso1g1497 ZF-HD_dimer 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1497 - - gmx:100799830 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1497 1 51633198 51635293 Gso11g0583 11 5216820 5219416 GST
Gso1g1497 1 51633198 51635293 Gso2g0469 2 4943491 4945615 PCT
Gso1g1497 1 51633198 51635293 Gso16g1107 16 29830473 29832477 PCT
Gso2g0469 2 4943491 4945615 Gso1g1497 1 51633198 51635293 PCT
Gso16g1107 16 29830473 29832477 Gso1g1497 1 51633198 51635293 PCT