Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1495 ATGAGAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCGCAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCAAGGCCAGGATTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATTGATAAAGCTAAACTACTTCTGCTACATTGCTCTGAATGTAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAGAGCTTAATCCAAATTCAGGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCTAATGAAGAAGAGGCTGGGAGGTTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGTTGATGATTCTGAAGTTAAAGCTCTCCAGTTTGCAGCATCTCGATTGAATATAACATCCCCAAAAGCCATCATAATAGAACAACGATCTATTAGGAAGTTGCTAGAAAAACTTGGACCAAATGACCTCAAAAAGAAGAATATACTGAGATATCTTCTGCATCTACTGAAAAGGCATGGAAAGCTCATGGTGGGAGAACATGTGGAGAAGCTCTATTCTCGTTCTGAGGAACAAGCTGCAACTGAGAACTCGAGTCACGGTTCTCTACGAAGCAACCATGTTGAATCAGACTCAAGCATGAACTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCCCTTGAGGAGTATTATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGAGTCAGGAGTAACATATGAAAGGATCTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGCCCCAAAACAAGAAAGAAACTAGTCAATATGGGATTAACTCCAAACATGGCCATGAAAGACTTGATATCAGAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTCGCACATGGGAAACTTCAAACACTTCCATTAACAGTTTAGCAAGCTATTTCAATGATTTCACCGCACCGGTGGATCTTAGTAACATGTCAATTGGGTCATTGGATACTAGTTTTAGTTCAGATGCCTCACAAAGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTCTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATCTGAAAGATCATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATAGAACCACTCGTGAGGTTTCTGAGCAATGCATATGATCTGCGTGATGTTCAAGTGCTGAGAGCCGGAAGTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGCAAGACTAATTTGAGTGAAGATACTTTCATTATGTTGGCAAGTTTTCTCGATTCAGAAGTGATAGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTGGTAAAACTAAAATTGCAGCATCTAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCCGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCACCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGTATATATATATTGAAAAATCTCTGTGACACGGAAGAGGGTAGGAAATCTGTTTCTGAAACAAAGGGATGCATATCTTCTGTTGCTGAAATACTTGAGACAGGCAATAACGAGGAACAAGAACATGCGTTGGCTGTTCTAGTTTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGATAATGCGTGAGCATGAGGAAATCATGGGCTCTCTTTTCTATATCTCACAGAATGGAAATGACAAAGGAAAGGAAAGTGCGTTGGAATTGTTCTATCTTTTGAAAGATGTTGACATTGCTGTGAATAAAAATTGTCCTGAGCCAAATATCAACAACTCTTGTCGAGATTCTAACAGTCACGACCGTGAAGAAAAAAAGCCATTAAAAAGATCCACGTTTCTGAAGAAACTATCACAGTTCTCAAAGTCCAGTTCTCATGCAACAAAATCCAAAAGATGA 2289 0.3976 MRTDIGEGEELQNPRSFKVHSKICTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNAIDKAKLLLLHCSECSKLYLAVTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRFVLDPNEEEAGRFVRELLTLTSDSVDDSEVKALQFAASRLNITSPKAIIIEQRSIRKLLEKLGPNDLKKKNILRYLLHLLKRHGKLMVGEHVEKLYSRSEEQAATENSSHGSLRSNHVESDSSMNYGQYKTHTNELSGVAPLEEYYKCPISSRLMYDPVIIESGVTYERIWIKKWFDEGNDICPKTRKKLVNMGLTPNMAMKDLISEWCRNNGVSIPDPSRHAEDIRTWETSNTSINSLASYFNDFTAPVDLSNMSIGSLDTSFSSDASQSKTTRGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLSDLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDVQVLRAGSQLLLEFVNNCRNGKTNLSEDTFIMLASFLDSEVIGETLAIMEELSGYGFGKTKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCHRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCISSVAEILETGNNEEQEHALAVLVSLCSQHVDYCKLIMREHEEIMGSLFYISQNGNDKGKESALELFYLLKDVDIAVNKNCPEPNINNSCRDSNSHDREEKKPLKRSTFLKKLSQFSKSSSHATKSKR* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1495 762 CDD RING-Ubox_PUB 274 316 IPR045210 -
Gso1g1495 762 Pfam U-box domain 272 340 IPR003613 GO:0004842|GO:0016567
Gso1g1495 762 MobiDBLite consensus disorder prediction 229 257 - -
Gso1g1495 762 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Gso1g1495 762 Gene3D - 431 761 IPR011989 -
Gso1g1495 762 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 745 - -
Gso1g1495 762 PANTHER U BOX DOMAIN-CONTAINING 9 745 - -
Gso1g1495 762 SUPERFAMILY RING/U-box 267 347 - -
Gso1g1495 762 MobiDBLite consensus disorder prediction 391 421 - -
Gso1g1495 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 344 IPR013083 -
Gso1g1495 762 MobiDBLite consensus disorder prediction 391 411 - -
Gso1g1495 762 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Gso1g1495 762 Pfam Kinesin-associated protein (KAP) 485 655 - -
Gso1g1495 762 MobiDBLite consensus disorder prediction 227 257 - -
Gso1g1495 762 SUPERFAMILY ARM repeat 432 704 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1495 Gso-Chr1 51590990 51597509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1495 1 708 U-box Gene Family AT4G36550 38.375 1.16e-151 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1495 - - gmx:100775550 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1495 1 51590990 51597509 Gso11g0586 11 5252464 5258257 GST
Gso1g1495 1 51590990 51597509 Gso2g0468 2 4905221 4910894 PCT
Gso1g1495 1 51590990 51597509 Gso16g1105 16 29776063 29781742 PCT
Gso2g0468 2 4905221 4910894 Gso1g1495 1 51590990 51597509 PCT
Gso16g1105 16 29776063 29781742 Gso1g1495 1 51590990 51597509 PCT