Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1494 ATGTCGTTGAAAAGCATAGTAAGGGAACTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTCGAGAGCAGGCGTTGGAACGGTCGGACAAAGTCACATGTTGCTCCTGATGTCATTCTAACTTCACTTGAACCTATTCAGCAAGGGCAGTGGGCAAATTTACCGCCTGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGATAGTGAGACTACTTGGCCTGCACGTGCTGTTGTTGTTTACTGTGGTTCGGTTTGTAAATCATGGAGGGCTGTTACGAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCTATTTCGTTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCAACATATCTATTGTACATTGGCCTGGTACCATCGGAGAATGAGACTGATAAGTTGTTATTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCGTCATATCTTTGGTTGCAGATGATTTTTTTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACAAGGAGCTGCAATTCAACCAGATAATAGATCTAGTAGGAGATTTCATTCTAAGCAGGTATCTCCTAGAGTTCCAGCATGTAACTATGTTGTAAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATATCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATCATTGACGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAAGGTCCAATTAGAGATCTAGACAATGCAAGCCTCCCAGAGCTACTACCAGTACAGAGCCAAGACTCAGCTGAGCCTCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAACTGCAATGCTGGTGCCTAAACTTCAACGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACAATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATATGCTTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1248 0.4415 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDVILTSLEPIQQGQWANLPPELLLDIIRRVEDSETTWPARAVVVYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFVISLVADDFFRSSNTYVGKLRSNFLGTKFTIYDSQPPQGAAIQPDNRSSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSISVSAVQEGGNAPTPTSFPQIIDEPFSPSPALKGKGPIRDLDNASLPELLPVQSQDSAEPLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1494 415 Pfam F-box domain 55 102 IPR001810 GO:0005515
Gso1g1494 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Gso1g1494 415 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 415 - -
Gso1g1494 415 Pfam Tub family 116 410 IPR000007 -
Gso1g1494 415 Gene3D - 48 103 - -
Gso1g1494 415 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Gso1g1494 415 MobiDBLite consensus disorder prediction 206 225 - -
Gso1g1494 415 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Gso1g1494 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Gso1g1494 415 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Gso1g1494 415 PANTHER TUBBY-RELATED 1 415 - -
Gso1g1494 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1494 Gso-Chr1 51585972 51589245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1494 1 415 TUB Transcription Factor Family AT2G18280 63.942 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso1g1494 Tub 3.5e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1494 K19600 - gmx:100798958 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1494 1 51585972 51589245 Gso11g0587 11 5259028 5262069 GST
Gso1g1494 1 51585972 51589245 Gso2g0466 2 4897180 4900625 PCT
Gso1g1494 1 51585972 51589245 Gso16g1103 16 29763972 29767458 PCT
Gso2g0466 2 4897180 4900625 Gso1g1494 1 51585972 51589245 PCT
Gso16g1103 16 29763972 29767458 Gso1g1494 1 51585972 51589245 PCT