Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1488 ATGGCGGTTCACGGTGACGATGACACCATGGTGATGGTGGTTCCCAAACTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCACGACGGCCACCGCCTCTTCCTCACCGCTTCAGCGGAGTTGGCAAGGCGCCGGATTGTAATTGGAGTTTGCGATGGACCTATGCTGGCAAAAAAACAGTTTGCTGAACTGATACAGCCCATTGAGGAAAGGATAAATAATGTCAAAACTTTCATAAAGTCTATCAAGCCGGAGTTGGAAGTGCAAGCTGTGCCAATCACAGATCCATTTGGCCCTTCCATTACAGATGAGAACTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCTATAAACAGAAGAAGAGCTGAAAGAGATCTTTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAAATTAAGCTGAGTTCATCAATGCTACGGAAGATTGAGGCTGAAAGGGCTAAACAACAAAACACGATGTTCCGTTTTCTTAATCCTTACTTTGTATCTTGTTTTGTTGGTATTTTTGCAGTTGGGAATTTCCAAAATTTTGCAAAGATGAATGATTTGATGACAAAGTCGTTCCTAAGTTATGTGGAACTAAAGAAACAGGCTCGCAAGGACCTTGAAGACGACGATCTTGACCTTGAAGCAGGGAAACTCAACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCTCCAATCTCTTATTTGATCTTCAGCAACTAAATGAAGAGGCAAAGTGCACCCACGGTGCCAAAGTTCTCCGTGGCCTAAGGGACCGGATGGAGTCCGACATGGTTGCCGTGCTTCGCAAGGCACGGACCATCAAGGCAATGCTTGAGGTTCTTGACCAATCCAACATAGCCAATCGTAGTTTGTCAGAATCCTACAAAGAGGGGAGCCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCTGTCCTTGAGGGACAAGATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACCGCGACTGGTGAGGTTCCTACTGAGGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTTGAGTTTCTGGCTGGGAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAAGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGAGAAAAGTTGGATAACATTGAGGATAATGTGGTTAATGCTGGTAACTTTATCCATGGTGGGACTAATAGTCTTTACTATGCCGACCAGATGAAGAAGAAGAACAGAAAATGGTTGTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCATTGCAATGTTGTCTTCTTGA 1512 0.4504 MAVHGDDDTMVMVVPKLSPPNTYEAVVNGGTFDRLHDGHRLFLTASAELARRRIVIGVCDGPMLAKKQFAELIQPIEERINNVKTFIKSIKPELEVQAVPITDPFGPSITDENLEAVIVSKETLPGGLAINRRRAERDLSQLKIEVVDLVSGESGEIKLSSSMLRKIEAERAKQQNTMFRFLNPYFVSCFVGIFAVGNFQNFAKMNDLMTKSFLSYVELKKQARKDLEDDDLDLEAGKLNPTEDRNLSQFFQEVEAIKVEMEEISNLLFDLQQLNEEAKCTHGAKVLRGLRDRMESDMVAVLRKARTIKAMLEVLDQSNIANRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFLSLRDKILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDADLGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNVVNAGNFIHGGTNSLYYADQMKKKNRKWLCWVFAVGLIILLVCIIAMLSS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1488 503 Pfam Syntaxin 249 444 IPR006011 GO:0016020
Gso1g1488 503 SMART SynN_4 242 369 IPR006011 GO:0016020
Gso1g1488 503 Gene3D - 242 373 - -
Gso1g1488 503 SMART tSNARE_6 404 471 IPR000727 -
Gso1g1488 503 PANTHER SYNTAXIN-112 208 499 - -
Gso1g1488 503 SUPERFAMILY Nucleotidylyl transferase 26 168 - -
Gso1g1488 503 PANTHER SYNTAXIN 208 499 IPR045242 -
Gso1g1488 503 SUPERFAMILY t-snare proteins 245 464 IPR010989 GO:0016020|GO:0016192
Gso1g1488 503 Gene3D - 406 502 - -
Gso1g1488 503 CDD SynN 247 397 IPR006011 GO:0016020
Gso1g1488 503 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 409 471 IPR000727 -
Gso1g1488 503 Coils Coil 257 277 - -
Gso1g1488 503 CDD SNARE_syntaxin1-like 413 468 - -
Gso1g1488 503 Pfam SNARE domain 445 495 IPR000727 -
Gso1g1488 503 Gene3D HUPs 25 175 IPR014729 -
Gso1g1488 503 CDD PPAT_CoAS 26 166 - -
Gso1g1488 503 Pfam Cytidylyltransferase-like 29 165 IPR004821 GO:0003824|GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1488 Gso-Chr1 51555485 51561797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1488 205 503 SNARE and Associated Proteins AT2G18260 60.390 2.50e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1488 K08486 - cit:102608467 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1488 1 51555485 51561797 Gso11g0590 11 5288732 5289788 GST