Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1462 ATGGCGGGTTTATTCTCACTAGGGGGTGGTAGTAGTAGTAGAGGGAACACCCAACAAGAGGAAATTCCTCCTCCGGATACCTTATTCTGGTATAACAACAAAAATGATGACGTTTCCTCTTACCACCGAGGTGGCGGGTTTGAGTTATGGAACCAGCAACAACTCATGGGCCAGGGCCCTCCTCCTCAACCGCGGCCTCTCTTTCACCAAGATGTCTACTCCGCGCTGGGCGTTGGGCCCAGCAGGCCCATCTCAGACGATCAGTCGTCGTCGAGATCCGGGTTCATGCTTGGAAGCGCAGGAGGAGGAGGAGGGATTAGCTGTCAGGACTGCGGGAACCAAGCCAAGAAAGATTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGCTTCGATTGCCAAACCCACGTCAAGAGTACTTGGGTCCCCGCTTCACGCCGCCGCGAACGATTACAACAATTCTCCGCTTTGCAACAAACCCTCGAACCACCTTCTTCTGGAGGAGGTGACCTTCCCAAAAGGCACAGAGAGAGAGACCATCATTATCATTCTCCTCTCGCCTGCACTCGCTTCCCTTCAAACCCCTTGTCCTCAGGGTTAGAGGAGGTGAATTTCCCGGCTTTGGTGAGGTCCGATGCGGAGTTCAGATGCGTACGTGTGAGCTCCATGGACGAGGAGGCGGAGGAGGAGTACGCATACTCAACGGCTGTAAACATTGCAGGACATGTTTTCAAAGGAATTTTATATGACTATGGTCCAGAAGGTAACACTAATTACATGGCTGGTGCTGGGGAAAGCTCTTCTACTGGTGTTGGTGCCTTGAACCTAACCACTGGTGCCATTGTTTCTGAGCCAATTGTTGATCCTTCTTCCTTGTATACGGCTCCTCTTAACACCTTCATCCCTGGTAGCGAATAA 924 0.526 MAGLFSLGGGSSSRGNTQQEEIPPPDTLFWYNNKNDDVSSYHRGGGFELWNQQQLMGQGPPPQPRPLFHQDVYSALGVGPSRPISDDQSSSRSGFMLGSAGGGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQFSALQQTLEPPSSGGGDLPKRHRERDHHYHSPLACTRFPSNPLSSGLEEVNFPALVRSDAEFRCVRVSSMDEEAEEEYAYSTAVNIAGHVFKGILYDYGPEGNTNYMAGAGESSSTGVGALNLTTGAIVSEPIVDPSSLYTAPLNTFIPGSE* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1462 307 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 207 255 IPR006511 -
Gso1g1462 307 MobiDBLite consensus disorder prediction 9 23 - -
Gso1g1462 307 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 306 IPR007818 GO:0003700|GO:0006355
Gso1g1462 307 Pfam Domain of unknown function (DUF702) 105 256 - -
Gso1g1462 307 MobiDBLite consensus disorder prediction 1 27 - -
Gso1g1462 307 MobiDBLite consensus disorder prediction 159 181 - -
Gso1g1462 307 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 306 - -
Gso1g1462 307 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1462 Gso-Chr1 51326033 51332971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1462 1 305 C2H2 Transcription Factor Family AT5G66350 46.903 9.21e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso1g1462 DUF702 4.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1462 - - gmx:100814589 577.015