Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1454 ATGGGTCGTGGCAAGATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTCACGACAAAAAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCATTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAAGATATTAACAATAAGCTCAGGAGACAGATCAGGCATAGGATAGGTGAGGGCTTGGACATGGACGACATGAGCTTCCAGCAACTGCGCACTCTTGAAGAAGATATGGTTTCATCCATAGGGAAAATACGCGAACGAAAGTTTCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCCTGAAGCAGATGAATGGAAATCTGCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGCAGCAGCAGCAGTTGCACTGGCCAACGGTGCCTCCACCCTGTATGCATTCTGTCATCAGCACCATTCTCATCTGAACCTTTTCTCCCACCATTCTAATGGAGAAGAGCAACCCTTTAAAACTGATCATGACCTTCGCCTTGCTTGA 720 0.4389 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWHSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDMDDMSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLKQMNGNLLLELEKCVIHPQFLLHDEGDEESAAAAAVALANGASTLYAFCHQHHSHLNLFSHHSNGEEQPFKTDHDLRLA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1454 239 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gso1g1454 239 Coils Coil 85 105 - -
Gso1g1454 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 Gene3D - 14 106 IPR036879 GO:0003677|GO:0046983
Gso1g1454 239 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g1454 239 MobiDBLite consensus disorder prediction 220 239 - -
Gso1g1454 239 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 239 - -
Gso1g1454 239 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso1g1454 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Gso1g1454 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso1g1454 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso1g1454 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1454 Gso-Chr1 51238158 51240693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1454 1 215 MADS-box Gene Family AT3G54340 50.230 1.15e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso1g1454 K-box 5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1454 K09264 - gmx:100784496 447.973