Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1448 ATGGAGCAACCGCTTCAACCGCAGCCGGAGACCGCCGCGGTCGGCGCTAGGGATTTGGAGCAGTCGCGGCTGGTCGGAGTTCCCGTGGCGGAGAGAGCGGGAAACAGTTGCGCAGCGAATTTGCAGGTGACCGTCGTGGACGGTGGTGCCGTTTTTAAACGGAAGCGCGGTCGGCCGGCCAAGGGAGCGCCGAAAGTGGCGCCTCCTGTGAGGCAACAGCAGGACGAGGAGGACGTTTGTTTTATTTGCTTCGACGGTGGCAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCTCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACATTATATGTGCTATACTTGCCCGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACATAGCCCAGGGAAATAAGGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAATCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGCTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGATAAGGGTGATTGCTTGGATAGGATAACTTCTGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTCCGTGATCCTCAACAGAAGTCACAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAACACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAGCCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCGGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTGGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTTCACAACATTAACTTGATCTACATGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATACTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATATCTAGCAATGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCCGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTACGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCAGCATGAAATTCCAGATGTACACTCCGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCAAATGGCGCCTCCAACGACATGGGAGGTAAAACACAAGACTTGCCTGCTACCCGAGAACCGGTTGGGAATACATGCACAGTGAAGAATAATATCAACTGTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCACCGGACATTTCATCACCGCTTCTCTTTACTGGGATGCAGCAGTCACTGAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTATACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCCGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTTTAGGGGTCAGTGTTACATTGGATAATAAAGATAATAGTCAGGATGCTGGGAAGAATGGAAAGAATGAAATTTCTGCAGATGGCCAAATTATAGAACAGAGCAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGACGAACCTGTTAGGAGCAATGGAGGGCATGGCCAACTGCATGTATACCCTTCACTACTGCCAACTGCCATTCCTGAGAAATTGAATGAGGATCCTTCTGATAAATTAAGGAAAGGCCATGGGATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGATCAGGACATCTGATGGGCAGAGTAATAGTGGGCATAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGAAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCGATTGCTTGGTTACCATGTCAGCTCATGTTTCTGGTACAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCGGCAGCATGTAATACATCTTCTGGACAGACCTGGAGTCACCCTAACGTAAATAGTTCTTCCAATTGCTTGGTTAACACATCAGCCCATGTTTCTGATACAAAATCATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACCTGGAGACACCCTGATATAAATAGTTCTTCCAATTGCTTAGTTACCACACCAGCTCATGTTTCAGCTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCCGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTAACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGAGCTCTACTGGTGATTTAAACTTACCATCTCAGCCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCATCAAAGAATTTCTGCGGAGCATCCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACGGCGGTGCAGGAAAACAGGAGTTCTAGTTCATACACTTCTGCAGTAACTCCAGGCTTTGGGGATAGCCAAACAAAATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATAGTAGGGAATCAGGTTTGAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGCATCATATAAGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTATTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4107 0.4315 MEQPLQPQPETAAVGARDLEQSRLVGVPVAERAGNSCAANLQVTVVDGGAVFKRKRGRPAKGAPKVAPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHLACIKRDEEFFRSKAKWNCGWHICSVCQKSSHYMCYTCPYSLCKGCTKDADFVCVRENKGLCGICMRTIMMIENIAQGNKEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLDKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKTRVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINAVASEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNINLIYMRRSLMENLTEDTEKIHEKVVGSFVRIRISSNDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRQHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGASNDMGGKTQDLPATREPVGNTCTVKNNINCDDTAIDDSTNAVVKSEVSSVAPDISSPLLFTGMQQSLNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTDALSGKCSKNVSLPFNSQLLSLGVSVTLDNKDNSQDAGKNGKNEISADGQIIEQSKEQKPQVDNTSTQSDGKDEPVRSNGGHGQLHVYPSLLPTAIPEKLNEDPSDKLRKGHGIVGNSENRNNGSIRTSDGQSNSGHSYQKQSDSEENSGKSSGQTWRHPNVNSSSDCLVTMSAHVSGTKTSPHKLGFDLHNPPSPPAACNTSSGQTWSHPNVNSSSNCLVNTSAHVSDTKSSPHKLGFDLHNPPSPPACNTSSGQTWRHPDINSSSNCLVTTPAHVSATKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHHQRISAEHPSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSAVTPGFGDSQTKYGSDRFSVSRDRGFQGHSRESGLSRSRIPYNRQPSYGVGNGASYKPLPKGQRVCKFYESGYCKKGASCDYWHP* 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1205 1225 - -
Gso1g1448 1368 Pfam GYF domain 740 782 IPR003169 GO:0005515
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1275 1299 - -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1182 1225 - -
Gso1g1448 1368 SUPERFAMILY FYVE/PHD zinc finger 62 124 IPR011011 -
Gso1g1448 1368 ProSiteProfiles SWIB/MDM2 domain profile. 294 377 IPR003121 -
Gso1g1448 1368 Coils Coil 561 581 - -
Gso1g1448 1368 ProSiteProfiles GYF domain profile. 737 791 IPR003169 GO:0005515
Gso1g1448 1368 SMART rtf1 427 537 IPR004343 GO:0003677
Gso1g1448 1368 Gene3D - 428 557 IPR036128 GO:0003677
Gso1g1448 1368 Gene3D SWIB/MDM2 domain 293 382 IPR036885 -
Gso1g1448 1368 Pfam SWIB/MDM2 domain 302 375 IPR003121 -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1314 1333 - -
Gso1g1448 1368 SMART PHD_3 79 125 IPR001965 -
Gso1g1448 1368 SUPERFAMILY SWIB/MDM2 domain 299 376 IPR036885 -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 839 861 - -
Gso1g1448 1368 Gene3D - 739 795 IPR035445 -
Gso1g1448 1368 ProSiteProfiles Zinc finger PHD-type profile. 77 143 IPR019787 -
Gso1g1448 1368 SUPERFAMILY GYF domain 734 790 IPR035445 -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 598 621 - -
Gso1g1448 1368 CDD PHD5_NSD 79 124 - -
Gso1g1448 1368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 167 IPR013083 -
Gso1g1448 1368 SUPERFAMILY CCCH zinc finger 1343 1367 IPR036855 GO:0046872
Gso1g1448 1368 ProSitePatterns Zinc finger PHD-type signature. 80 140 IPR019786 -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1275 1337 - -
Gso1g1448 1368 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 15 1368 - -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 887 901 - -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 598 639 - -
Gso1g1448 1368 ProSiteProfiles Plus3 domain profile. 427 560 IPR004343 GO:0003677
Gso1g1448 1368 CDD SWIB-MDM2_like 300 375 - -
Gso1g1448 1368 CDD GYF 737 792 IPR003169 GO:0005515
Gso1g1448 1368 MobiDBLite consensus disorder prediction 1182 1204 - -
Gso1g1448 1368 ProSiteProfiles Zinc finger C3H1-type profile. 1343 1368 IPR000571 GO:0046872
Gso1g1448 1368 MobiDBLite consensus disorder prediction 965 994 - -
Gso1g1448 1368 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 15 1368 - -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 903 952 - -
Gso1g1448 1368 SMART swib_2 297 380 IPR019835 -
Gso1g1448 1368 MobiDBLite consensus disorder prediction 839 952 - -
Gso1g1448 1368 Pfam Plus-3 domain 432 535 IPR004343 GO:0003677
Gso1g1448 1368 SMART gyf_5 738 793 IPR003169 GO:0005515
Gso1g1448 1368 SUPERFAMILY Plus3-like 428 556 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1448 Gso-Chr1 51172094 51178838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1448 77 157 PHD Transcription Factor Family AT4G14920 34.568 4.46e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso1g1448 Plus-3 2.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1448 - - gmx:100810823 2791.53