Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1445 ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCCGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAACAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCTAGTCCAAGTGATGTACCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATTGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCTGAAAATCCGGCTTCACAACCATTGGAACCAGGTGAGGCTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAAGATGCCTATGGTTCCAACGCCAGGACCTGATGCTGATGGGCATGCCAAGATGGAAAGTAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4432 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPASQPLEPGEAKRGQNPLPKLKMGEKQQNHKMPMVPTPGPDADGHAKMESKMIDLNMKPNRIHEQASNNQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1445 184 CDD Bbox1_BBX-like 4 47 - -
Gso1g1445 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Gso1g1445 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Gso1g1445 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gso1g1445 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Gso1g1445 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gso1g1445 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gso1g1445 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Gso1g1445 184 Gene3D Classic Zinc Finger 2 91 - -
Gso1g1445 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Gso1g1445 184 CDD Bbox1_BBX-like 56 96 - -
Gso1g1445 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso1g1445 184 MobiDBLite consensus disorder prediction 105 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1445 Gso-Chr1 51144695 51147789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1445 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.202 2.67e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso1g1445 zf-B_box 2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1445 - - gmx:100780544 390.578