Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1442 ATGCCTGCTCTTCTCCTCCTCATGGTGCTGTGCGCACCGTTCTTAACGTGCGCGGATCGCAGCGCCGTAACCATCGCTGAGATCCAAGCCTTGACGTCCTTCAAGCTCAACCTCCACGATCCCGTCAGAGCTCTCGACGGTTGGGATCCGTCGTCGCCGACGGCACCTTGCGACTGGCGCGGAGTCGGATGCACCAGCGACCGAGTCACGGAGCTGCGTCTGCCTCGTCTTCAACTCAGTGGCAGACTCAGTGAGCGTATCTCTGAGTTGCGCATGCTGCGTAAGATAAGCCTTCGTTCAAACTCCTTCAACGGCACCATTCCTTCGTCGCTATCCAAATGCACGCTCCTTCGGTCACTGTTCTTGCAGGATAATTCGTTTTACGGCAACCTTCCGGCGGAGATCGCGAACCTCACTGGCCTTATGATTCTCAACGTCGCGCAGAACCACATCTCCGGCAGCGTCCCCGGCGAACTCCCTCTCAGCCTCAAAACCCTCGACCTCTCGTCGAACGCTTTCTCCGGCGAGATTCCGAGCTCCATTGCGAACCTCTCTCAGCTTCAGTTGATAAACCTTTCCTACAACCAGTTCTCTGGCGAGATTCCGGCGAGCCTCGGGGAGCTTCAGCAGCTGCAGTACCTCTGGCTGGACCGCAACCTCCTCGGAGGAACGCTTCCTTCGGCGCTCGCTAATTGCTCTGCGCTTTTGCATCTGAGCGTGGAGGGAAACGCGCTTACCGGCGTGGTTCCGTCGGCGATTTCAGCGCTTCCGAGGCTTCAGGTGATGTCGCTCTCTCAGAACAACCTCACTGGCTCCATTCCGGGTTCCGTTTTCTGCAACCGTTCCGTCCACGCGCCGTCGCTGCGGATTGTTAACCTCGGATTCAACGGTTTCACGGATTTCGTGGGGCCTGAGACCAGCACGTGTTTCAGCGTTCTTCAGGTTTTGGATATTCAGCACAATCGCATACGAGGCACGTTTCCGTTGTGGTTGACCAACGTGACCACGTTGACCGTGCTTGATGTTTCGAGAAATGCACTTTCCGGCGAGGTTCCGCCGGAGGTAGGAAACCTTATCAAGTTGGAGGAGTTGAAGATGGCTAATAATTCCTTCACAGGCACCATTCCGGTGGAACTCAAGAAATGTGGGTCCCTAAGTGTCGTTGATTTTGAAGGCAACGATTTTGGTGGAGAAGTTCCTTCTTTTTTCGGTGATATGATTGGCCTCAATGTGTTGTCTCTTGGTGGAAACCACTTCTCTGGTTCGGTTCCGGTGAGTTTTGGTAACCTTTCATTTCTTGAAACATTGAGTTTGAGAGGTAATAGGTTGAATGGAAGTATGCCTGAGATGATAATGGGATTGAATAATTTGACTACCCTGGACCTTAGTGGAAACAAATTCACGGGTCAGGTTTATGCGAATATTGGGAATTTGAACAGGTTAATGGTCCTCAATCTGAGTGGCAATGGCTTCTCTGGAAAAATTCCTTCTAGTTTGGGTAATCTTTTCAGGCTAACTACACTTGACTTGAGCAAAATGAATCTTTCTGGAGAGTTACCACTTGAACTCTCGGGGTTGCCCAGTCTGCAAATTGTTGCACTTCAGGAGAACAAGTTATCTGGTGATGTGCCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGTACGTGAATCTCAGTTCTAATTCCTTCTCTGGGCATATTCCTGAAAACTATGGCTTTCTTCGATCGTTGCTTGTTCTTTCGTTGTCTGATAATCACATTACAGGAACAATTCCTTCGGAGATTGGAAACTGCTCTGGTATTGAAATTCTTGAGCTTGGATCAAATTCTTTGGCAGGTCACATTCCTGCTGATATCTCTCGCCTCACCCTTTTGAAAGTTCTTGATTTGAGTGGGAACAATTTAACTGGGGATGTGCCTGAAGAAATCTCCAAATGCTCGTCACTAACCACGTTGTTTGTGGATCACAACCATCTTTCTGGGGCCATACCTGGGTCGTTGTCAGATCTATCAAACCTAACAATGCTAGATCTCTCTGCTAATAACTTGAGTGGGGTAATTCCGAGTAATCTTTCCATGATATCTGGTTTGGTGTACTTAAATGTCTCAGGAAATAACCTAGATGGTGAGATACCACCAACGTTGGGATCCAGGTTCAGCAACCCCTCTGTGTTCGCAAATAATCAAGGTTTATGTGGGAAGCCATTGGATAAAAAATGTGAAGATATAAACGGTAAAAACAGAAAGAGGTTGATTGTGCTGGTTGTTGTCATTGCTTGTGGAGCTTTTGCTCTAGTTTTATTTTGCTGCTTCTACGTTTTCAGTCTGTTGAGATGGCGTAAAAGACTGAAACAAGGAGTATCGGGTGAAAAGAAAAAGAGTCCCGCAAGAGCCAGTTCTGGAACAAGTGGAGCTCGTAGCAGCAGCACTGAGAGTGGGGGACCAAAACTAGTGATGTTCAACACCAAAATTACACTTGCTGAGACCATTGAAGCAACAAGACAATTCGACGAAGAGAATGTGCTGAGCAGAACAAGGCATGGATTAGTGTTCAAGGCCTGCTACAACGATGGAATGGTCCTTTCCATTCGCAGGCTCCAAGATGGATCATTGGATGAGAACATGTTCAGAAAAGAAGCCGAATCACTAGGCAAAGTCAAGCACCGGAATTTAACAGTTCTCAGAGGTTACTATGCTGGTCCACCTGACATGAGACTCCTAGTCCACGATTACATGCCCAATGGAAACCTTGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGTCACCTCATTGCACTAGGCATTGCCCGTGGTTTAGCCTTCCTACACCAATCCTCAATGGTCCATGGCGACGTGAAGCCACAAAACGTCCTATTCGATGCAGATTTCGAAGCCCATTTATCAGATTTTGGGTTAGACAAGTTAACAGTAGCCACTCCTGGCGAAGCCTCCACTTCAACTTCCGTTGGCACATTGGGTTACGTTTCTCCAGAAGCAGTCTTAACCGGGGAAGCAACAAAGGAGAGTGATGTCTACAGCTTTGGCATTGTGTTGCTGGAACTACTGACAGGAAAACGACCTGTGATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTAAAAAAACAACTTCAGAGGGGTCAAATAACGGAGCTATTAGAACCAGGTTTACTTGAGTTGGACCCAGAATCATCAGAGTGGGAAGAGTTTTTACTGGGTGTAAAAGTTGGGTTGCTTTGCACAGCACCTGACCCTCTTGATCGGCCAACCATGTCCGACATCGTTTTCATGCTTGAAGGCTGCAGAGTTGGTCCTGATATCCCATCCTCCGCAGATCCCACATCTCAACCTTCTCCGGCATAA 3390 0.4838 MPALLLLMVLCAPFLTCADRSAVTIAEIQALTSFKLNLHDPVRALDGWDPSSPTAPCDWRGVGCTSDRVTELRLPRLQLSGRLSERISELRMLRKISLRSNSFNGTIPSSLSKCTLLRSLFLQDNSFYGNLPAEIANLTGLMILNVAQNHISGSVPGELPLSLKTLDLSSNAFSGEIPSSIANLSQLQLINLSYNQFSGEIPASLGELQQLQYLWLDRNLLGGTLPSALANCSALLHLSVEGNALTGVVPSAISALPRLQVMSLSQNNLTGSIPGSVFCNRSVHAPSLRIVNLGFNGFTDFVGPETSTCFSVLQVLDIQHNRIRGTFPLWLTNVTTLTVLDVSRNALSGEVPPEVGNLIKLEELKMANNSFTGTIPVELKKCGSLSVVDFEGNDFGGEVPSFFGDMIGLNVLSLGGNHFSGSVPVSFGNLSFLETLSLRGNRLNGSMPEMIMGLNNLTTLDLSGNKFTGQVYANIGNLNRLMVLNLSGNGFSGKIPSSLGNLFRLTTLDLSKMNLSGELPLELSGLPSLQIVALQENKLSGDVPEGFSSLMSLQYVNLSSNSFSGHIPENYGFLRSLLVLSLSDNHITGTIPSEIGNCSGIEILELGSNSLAGHIPADISRLTLLKVLDLSGNNLTGDVPEEISKCSSLTTLFVDHNHLSGAIPGSLSDLSNLTMLDLSANNLSGVIPSNLSMISGLVYLNVSGNNLDGEIPPTLGSRFSNPSVFANNQGLCGKPLDKKCEDINGKNRKRLIVLVVVIACGAFALVLFCCFYVFSLLRWRKRLKQGVSGEKKKSPARASSGTSGARSSSTESGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRHGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVHDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQNVLFDADFEAHLSDFGLDKLTVATPGEASTSTSVGTLGYVSPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1442 1129 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Gso1g1442 1129 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Gso1g1442 1129 Pfam Leucine rich repeat 576 635 IPR001611 GO:0005515
Gso1g1442 1129 Pfam Leucine rich repeat 210 269 IPR001611 GO:0005515
Gso1g1442 1129 MobiDBLite consensus disorder prediction 795 816 - -
Gso1g1442 1129 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1125 - -
Gso1g1442 1129 Pfam Protein kinase domain 848 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1442 1129 SUPERFAMILY RNI-like 363 725 - -
Gso1g1442 1129 SUPERFAMILY L domain-like 284 376 - -
Gso1g1442 1129 Gene3D Ribonuclease Inhibitor 247 350 IPR032675 -
Gso1g1442 1129 ProSiteProfiles Protein kinase domain profile. 836 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1442 1129 Gene3D Ribonuclease Inhibitor 351 452 IPR032675 -
Gso1g1442 1129 Gene3D Transferase(Phosphotransferase) domain 1 912 1115 - -
Gso1g1442 1129 SUPERFAMILY Protein kinase-like (PK-like) 816 1117 IPR011009 -
Gso1g1442 1129 SMART LRR_typ_2 478 502 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 208 232 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 574 598 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 90 114 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 670 693 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 256 280 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 406 429 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 622 646 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 430 453 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 454 474 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 334 358 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 526 549 IPR003591 -
Gso1g1442 1129 SMART LRR_typ_2 694 718 IPR003591 -
Gso1g1442 1129 SMART serkin_6 836 1106 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1442 1129 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Gso1g1442 1129 Pfam Leucine Rich Repeat 162 176 IPR013101 -
Gso1g1442 1129 SUPERFAMILY L domain-like 26 300 - -
Gso1g1442 1129 MobiDBLite consensus disorder prediction 788 816 - -
Gso1g1442 1129 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1125 - -
Gso1g1442 1129 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515
Gso1g1442 1129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Gso1g1442 1129 SMART LRR_sd22_2 670 693 - -
Gso1g1442 1129 SMART LRR_sd22_2 160 186 - -
Gso1g1442 1129 SMART LRR_sd22_2 454 480 - -
Gso1g1442 1129 SMART LRR_sd22_2 622 645 - -
Gso1g1442 1129 Gene3D Ribonuclease Inhibitor 453 744 IPR032675 -
Gso1g1442 1129 PRINTS Leucine-rich repeat signature 625 638 - -
Gso1g1442 1129 PRINTS Leucine-rich repeat signature 670 683 - -
Gso1g1442 1129 Gene3D Ribonuclease Inhibitor 161 246 IPR032675 -
Gso1g1442 1129 Gene3D Ribonuclease Inhibitor 25 160 IPR032675 -
Gso1g1442 1129 Gene3D Phosphorylase Kinase; domain 1 801 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1442 Gso-Chr1 51106707 51111265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1442 4 1129 Receptor kinase-like Gene Family AT4G36180 69.833 0.0 1520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Gso1g1442 Pkinase 9.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1442 - - gmx:100305362 2081.6