Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1439 ATGTCTGCCGCCGCCGAAGAAGCTAACGCTCCCGCCGTCGAAAAGCCGGTTGAGGAGGTGAAGGCGCCGAACCCCGCGAAGGAGAAGAAACCTAAGGCTCCGAAGGAAAAGAAGCCAAAACAGGCCAAAACAGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGATCGCTTTGAACGAGAAAGGAGGATCGAGTCCTTATGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGTCTGCAACTAAAGAACCAAGCTGCGAGAGGGAAACTCGTGAAGATCAAGGCTTCGTACAAGTTAACCGAAGCCGCGAAGAAGGAGAACACCGCCAAAGTGACGAAGGCCAACGCTGAGAAAAAGGAATCGCGTCCAAAACGAAGCAAAACCGCAACCGCCGCTGCTCCGAAGAAAACCGAGGCGGTTAAAAGGGCAGCGAAGAAGGTAGTGCCGAAGAAGACGAAGAAAGTGTCGACGCCTGCGAAGCCCAAGCAGCCCAAGTCCATTAGGTCTCCGACCAAGAGGGCCCGGAAAGCAGCTGTTGCTGCGGCTTGA 594 0.532 MSAAAEEANAPAVEKPVEEVKAPNPAKEKKPKAPKEKKPKQAKTASHPPYFQMIKEALIALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLTEAAKKENTAKVTKANAEKKESRPKRSKTATAAAPKKTEAVKRAAKKVVPKKTKKVSTPAKPKQPKSIRSPTKRARKAAVAAA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1439 197 MobiDBLite consensus disorder prediction 119 197 - -
Gso1g1439 197 Pfam linker histone H1 and H5 family 47 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1439 197 PANTHER HISTONE H1 7 193 - -
Gso1g1439 197 PRINTS Histone H5 signature 33 54 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso1g1439 197 PRINTS Histone H5 signature 60 77 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso1g1439 197 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso1g1439 197 PRINTS Histone H5 signature 168 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso1g1439 197 PANTHER HISTONE H1 7 193 - -
Gso1g1439 197 CDD H15 44 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1439 197 SMART h15plus2 44 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1439 197 MobiDBLite consensus disorder prediction 119 141 - -
Gso1g1439 197 MobiDBLite consensus disorder prediction 1 49 - -
Gso1g1439 197 SUPERFAMILY "Winged helix" DNA-binding domain 43 126 IPR036390 -
Gso1g1439 197 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 46 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1439 197 Gene3D - 41 125 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1439 Gso-Chr1 51063488 51064433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1439 34 154 Single Myb Histone (SMH) Gene Family AT1G72740 33.077 1.06e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1439 K11275 - gmx:100500169 237.269