Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1424 ATGGGTGACATAGTGAAGCAAATATTGGCGAAGCCGATCCAGCTGGCGGACCAAGTAACCAAAGCCGCCGACGAGGCCAGCTCCTTCAAGCAGGAATGCGGCGACCTCAAGTCCAAGACGGAGAAGCTGGCGGCGCTGCTCCGTCAGGCGGCGCGTGCGAGTTCCGAACTCTACGAGCGTCCCACGCGCCGCATCATCGACGAAACCGAACAAGTCCTCGACAAGGCCCTCGCCCTGGTCCTGAGGTGCCGCGGCAACGCCCTCATGAAGCGCGTCTTCACGCTCAACCCGGGAGCCGCGTTCCGCAAGGTCTCCTTGCTCCTCGAGAACTCCACCGGCGACGTCTCCTGGCTCCTCCGCGTCTCCGCCGGCGACGGAGGCGGCGACTACATCGGCGGGCTCCCTCCTATCGCGGCGAACGACCCGATCCTCTGCCTCATCTGGGAGCAGATCGCCGTCCTCCACACGGGCTCGGCGGAGGACCGGTCCGACGCGGCCGCGCAGCTGGTCTCGCTGGCCAGCAGCAGCGACCGCTACGGGAAGCTGATAATCGAAGAAGGCGGGGTGGGCCCACTTCTGAAGCTTCTGAAGGAAGGAAAACCCGAAGGGCAGGAACACGCGGCACGTGCCATCGGGGTTCTGGGGCGTGACCCCGAGAGCGTTGAGCACGTGATCCACGTGGGCGCGTGCTCCGTCTTTGCGAAGATCCTCAAAGAAGGTCCTATGAAAGTGCAAGCTGTCGTGGCCTGGGCCGTGTCGGAACTCGCCGCCAATTACCCCAAGTGTCAGGACCTTTTCGCCCAGCACAACATCATAAGGCTACTCGTCGGTCACCTCGCTTTCGAAACCGTCGAGGAGCACAGTAAGTACACCATTGTCAGCACCAAACCCACTTCCATCCACGCCCTCGTCATCGCCAGCACCAATAACGTCAAGATGGAAGATCCATTTCTCGACAACCAAAACAAAGCACGAATGCCACATCCCTTGGGTGAAAGACCACGAAATCTCCATAGAGTAATTACTAGCACAATCGCAATGCACGCTGCCACCAAACACGGAAACGAATCAAATCCCAAGACCAATGGAGTTGGTAATGATGCCAAGCAAGGAAATCAGGATCAGAATCAGAATCACCAGCCAAACTATTCACATTCGGGGATAAACATGAAAGGAAGGGATCATGAGGATCCTAAGACTAAGGCTAACATGAAGGAAATGGCAGCGAGGGCTCTCTGGCAATTAGCGAAAGGAAACTCGCCAATTTGTCGTAGCATTACTGAATCAAGAGCACTGCTCTGTTTCGCTGTTCTTCTTGAAAAAGGAACGGAGGCTGTGCAGTACAATTCGGCTATGGCGGTGATGGAGATTACAGCAGTGGCAGAGAAAGATGCTGAATTAAGGAAATCCGCGTTTAAGCCCAACTCTCCTGCTTGCAAAGCCGTTGTTGATCAAGTGGTGAAGATAATAGAGAAAGCGGATTCGGAGCTTTTGATTCCGTGCATAAAGACGATTGGGAATCTGGCGAGGACCTTCAAGGCGACGGAGACAAGGATGATAGGGCCATTGGTGAAGCTTCTTGACGAAAGGGAAGCGGAGGTGTCAAGGGAAGCGTCGATTGCGCTCACGAAATTCGCGTGCACGGAGAACTACCTTCACGTGGATCACTCCAAGGCGATTATAATCGCCGGCGGGGCCAAGCACTTGATTCAGCTGGTGTATTTTGGAGGGGAAGAGATGGTTCAGATTCCAGCGCTGGTTCTGCTCTCCTACATTGCAATGCACGTCCCTGATAGCGAGGAACTTGCTCAGGCTGAGGTGCTTGGAGTCATTGAATGGGCCTCCAAGCAATCCTCCATTGCTAATGACCAAGCAATCGAGGCCTTGTTGTTGGAGTCCAAGACCAAGTTGGACCTTTACCAGTCTAGAGGTCCTAGAGGATTCCATAAATTGCATTTGCATCAGTAG 1968 0.5503 MGDIVKQILAKPIQLADQVTKAADEASSFKQECGDLKSKTEKLAALLRQAARASSELYERPTRRIIDETEQVLDKALALVLRCRGNALMKRVFTLNPGAAFRKVSLLLENSTGDVSWLLRVSAGDGGGDYIGGLPPIAANDPILCLIWEQIAVLHTGSAEDRSDAAAQLVSLASSSDRYGKLIIEEGGVGPLLKLLKEGKPEGQEHAARAIGVLGRDPESVEHVIHVGACSVFAKILKEGPMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVEEHSKYTIVSTKPTSIHALVIASTNNVKMEDPFLDNQNKARMPHPLGERPRNLHRVITSTIAMHAATKHGNESNPKTNGVGNDAKQGNQDQNQNHQPNYSHSGINMKGRDHEDPKTKANMKEMAARALWQLAKGNSPICRSITESRALLCFAVLLEKGTEAVQYNSAMAVMEITAVAEKDAELRKSAFKPNSPACKAVVDQVVKIIEKADSELLIPCIKTIGNLARTFKATETRMIGPLVKLLDEREAEVSREASIALTKFACTENYLHVDHSKAIIIAGGAKHLIQLVYFGGEEMVQIPALVLLSYIAMHVPDSEELAQAEVLGVIEWASKQSSIANDQAIEALLLESKTKLDLYQSRGPRGFHKLHLHQ* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1424 655 PANTHER ARMADILLO REPEAT ONLY 4 1 649 - -
Gso1g1424 655 Gene3D - 473 631 IPR011989 -
Gso1g1424 655 SMART arm_5 419 459 IPR000225 GO:0005515
Gso1g1424 655 SMART arm_5 553 594 IPR000225 GO:0005515
Gso1g1424 655 SMART arm_5 217 257 IPR000225 GO:0005515
Gso1g1424 655 SMART arm_5 175 216 IPR000225 GO:0005515
Gso1g1424 655 SMART arm_5 475 510 IPR000225 GO:0005515
Gso1g1424 655 PANTHER ARMADILLO REPEAT ONLY 2 1 649 - -
Gso1g1424 655 Gene3D - 3 121 IPR036537 GO:0007166
Gso1g1424 655 Gene3D - 148 313 IPR011989 -
Gso1g1424 655 Gene3D - 394 472 IPR011989 -
Gso1g1424 655 Coils Coil 36 56 - -
Gso1g1424 655 MobiDBLite consensus disorder prediction 350 398 - -
Gso1g1424 655 MobiDBLite consensus disorder prediction 350 387 - -
Gso1g1424 655 SUPERFAMILY ARM repeat 152 613 IPR016024 -
Gso1g1424 655 Pfam Armadillo/beta-catenin-like repeat 182 214 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1424 Gso-Chr1 50863653 50866002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1424 91 276 U-box Gene Family AT2G23140 28.497 1.34e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1424 - - gmx:100816188 1247.65