Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1412 ATGGCAGAAAACAAAGATGAAATCTATTCTGAAAGTTCTGAATGTTCACCAGGCTCAACCTCTCCAATGGGTAGCAAGTGCAGATACTTGTTTCATAGATTATGCGCTTGTGCCACTTCATGGAACAAAAACAGCACCCCAAAGGGTCGAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCTTCCTACTATAGTGTTTTTGTGGTTCGACTAGCAATCATGGTGATGCTAGCCATCTTGATTGGGTTGCTCACTATACTGACATGGCATTTCACCAAGATTTATACAGCAAAATCACTTAGCAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCTGTTTTGAGGATGTGGAATATTTTAAACTCTACTTCTGAAATTACTACAGCTCAAGTCAAACTGTCTCAGTATGTGATAAGACGTCACAGCAACCCTGCGACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAACGGATTTGTTCAAGCATTCCATAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGTGCTAGCAACTCTAATGCGGTCAATTCCATTTCAAAGTATCGAGCTTGGGATGTTCGTGGTAACTATTCTGCAATCTGGTACCGTGAACCACTTGACCCTGTGAGTGGTGAGAAGATTGGAAAAGCTATGAAAATTGCACCTGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTGCCTGATGGCGTAGCTTCGTGGCACGTCGCGGTGAGCAAGTTCACAGATTCACCATTGCTTTCAGCAGCATTACCAGTTTGGGACTCTTCTAATAAGACTATTATGGCAGTTGTGGGGGTAACAACTGCACTTTATAGTGTAGGACAATTAATGAGAGAGCTAGTTGAGATGCACAGTGGCCATATGTATTTGACATCTCAAGAGGGTTATTTACTCGCAACTTCCACAAGTGCACCTCTACTGGCAACTTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAGACAACGTGATTCGACTGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCATGACATTCATGTAGAGAATGTCAAGCTAGGCCACCAGAGATATTACATTGACTCATTCGTCCTAAATTTGAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCGTCATTATGTATTTTAGTCATTGGATGCGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGTAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTTATTGGGTTGCTTGACATTCTTATATCAGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGCCTTCTTAATAACATATTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCCGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTAACCATAATGTGGAGACTGTTTTAGACCTGTCTGATGACATGCCAAAGTTAGTTAAGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCCAAATTCTTCCATTGGTAGTCCAAATTTTCCTCTTGACCAGAAGAAATCACGGAGTCTACAAAAGTGCAGAGAGAGGCCAAATGCAAACCATGCTAAGAGAACATCTATAAAAGATAAGAAAGTGATACTTTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACACGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTGAGAAACTTGGTTAACAAGATGGGTGGAGACATCAGGGTTGTCAAAAAGGAGGGCTCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGAGCCAATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGCACTGCATGGCAACATGAGTCGATTAATTACATCCAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAACGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTTCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATAGGAGATATGAGGAACCCGGTTTTTGTCATTGTTGTTGACATTGGACTACTTGATTTGAGTACAGATATATGGAAGGAACAGTTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTTGTATGGATGCTAAATCATGACACTTCCAATACCGTAAAGATGGAGCTCCGTAGGAAAGGGCATGTACTTATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCAAATTTTGGAAGCTGTCATAAAGGAGAGAAATCTTGAGCTACAAAAGAAAAACATGACTGCTCCAAGGACCACAATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCCACTCATTTTGATGGTGCTAGCTCTGATGATTCTGACATACCTGAAACAGGTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAGCTGAGAAGCTAGCCAAATCTCATGCCTCATCACCATACCATATGAATAACTGCCTAGTTAAATTAACAAATGAAAATGAATGTTTGGAAAAACATAATTTGAGGAAAGAAGAATCTTCTAGCCCCAGCTCAAATTCTGCCACTGAAGACAACCAACCTAAATCACTGTCCACCAAAGAATTATCATCCATTTCAACAGAAGATCAGGAGGAAGATTCTGAATGTGGGGAAACAAATAGGGTCACCAGCTCAAGTAAAGCAGTAGATGGAAAAAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCTACCATAATGCTTGAAAAAATGGGAGCTGATGTTGTTGCTGTAGGTGATGGACAACAGGCAGTAGATGCTCTCAATTGCATGTTCGCTGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACGAGATCTCAAACAGAGATTTCGACTTGTCGTCCTTATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACAAGCATGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATAGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCTTGA 3741 0.4095 MAENKDEIYSESSECSPGSTSPMGSKCRYLFHRLCACATSWNKNSTPKGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLSSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGASNSNAVNSISKYRAWDVRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTSAPLLATSTKPPKLKMAVDCEDNVIRLGAEWLQRTYGNNFPPSHDIHVENVKLGHQRYYIDSFVLNLKRLPLVGVIIIPRKYIMGQVDERAYKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVKGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNSSIGSPNFPLDQKKSRSLQKCRERPNANHAKRTSIKDKKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIRVVKKEGSGTLMRLCLLLSEPMDVTEQQCAVDLTDNGLVVLLALHGNMSRLITSKWLQKNGVCTMEASDWNGLTQILRELFHARSSVHNTDFDAHYPAKEELKSKLLNIGDMRNPVFVIVVDIGLLDLSTDIWKEQFNFLHRYFGRAKFVWMLNHDTSNTVKMELRRKGHVLMVNKPLYKAKMIQILEAVIKERNLELQKKNMTAPRTTMKEGDLHEFLEIDSTHFDGASSDDSDIPETGGSNPVSANGDKPAEKLAKSHASSPYHMNNCLVKLTNENECLEKHNLRKEESSSPSSNSATEDNQPKSLSTKELSSISTEDQEEDSECGETNRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVDALNCMFAAEDCRRESLQKERNTRSQTEISTCRPYDLILMDCQMPKMDGYEATKAIRKSEVGTSMHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKRTS* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1412 1246 MobiDBLite consensus disorder prediction 1032 1087 - -
Gso1g1412 1246 MobiDBLite consensus disorder prediction 1038 1062 - -
Gso1g1412 1246 Gene3D - 490 569 - -
Gso1g1412 1246 SMART HisKA_10 502 568 IPR003661 GO:0000155|GO:0007165
Gso1g1412 1246 Gene3D - 570 767 IPR036890 -
Gso1g1412 1246 SMART REC_2 1096 1238 IPR001789 GO:0000160
Gso1g1412 1246 CDD HisKA 503 564 IPR003661 GO:0000155|GO:0007165
Gso1g1412 1246 Pfam Response regulator receiver domain 1098 1237 IPR001789 GO:0000160
Gso1g1412 1246 PRINTS Bacterial sensor protein C-terminal signature 692 706 IPR004358 GO:0016310|GO:0016772
Gso1g1412 1246 PRINTS Bacterial sensor protein C-terminal signature 710 720 IPR004358 GO:0016310|GO:0016772
Gso1g1412 1246 PRINTS Bacterial sensor protein C-terminal signature 727 745 IPR004358 GO:0016310|GO:0016772
Gso1g1412 1246 ProSiteProfiles Response regulatory domain profile. 1097 1242 IPR001789 GO:0000160
Gso1g1412 1246 MobiDBLite consensus disorder prediction 1 22 - -
Gso1g1412 1246 MobiDBLite consensus disorder prediction 973 1009 - -
Gso1g1412 1246 ProSiteProfiles Histidine kinase domain profile. 509 767 IPR005467 -
Gso1g1412 1246 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 765 IPR003594 -
Gso1g1412 1246 Pfam His Kinase A (phospho-acceptor) domain 503 568 IPR003661 GO:0000155|GO:0007165
Gso1g1412 1246 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 557 763 IPR036890 -
Gso1g1412 1246 SMART HKATPase_4 615 767 IPR003594 -
Gso1g1412 1246 SUPERFAMILY CheY-like 1094 1243 IPR011006 -
Gso1g1412 1246 Coils Coil 1018 1038 - -
Gso1g1412 1246 Gene3D - 1075 1244 - -
Gso1g1412 1246 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 569 IPR036097 GO:0000155|GO:0007165
Gso1g1412 1246 CDD REC_hyHK_CKI1_RcsC-like 1098 1238 - -
Gso1g1412 1246 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1243 - -
Gso1g1412 1246 PANTHER OSMOSENSOR HISTIDINE KINASE 23 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1412 Gso-Chr1 50745861 50753586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1412 9 1243 Histidine Kinase Gene Family AT2G17820 64.668 0.0 1588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso1g1412 HATPase_c 4.3e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1412 - - gmx:100814068 2428.28