Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1401 ATGACTCTCAAAGGTTTGGTATCACTTGTCATTAATTTAATTGGCTTAGCTGAGGGAACAAGGAACAATGATGCCCCTTTACCTTCTTACATGCTATCCAGCCATATAGAAAGTAACAAGCAACAATCATCTGAATCTACATCAGCATCAGCATCCAATTTTAATGAGGATAGTTGGTGTTGTGTGTGCTTGTCAAGGTTAAAGGCCAAAGATGAAATCCGTGTCCTTCCTTGCTCGCACAAATTCCATAAGAGTTGTGTAAATAGATGGCTTAAGGGTCGCCACAAAACGTGTCCACTCTGCCGTTTCTCGATGGGAGCCGAGGAGAAGTCTCATCGTGCAGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGGTATGTAA 402 0.4129 MTLKGLVSLVINLIGLAEGTRNNDAPLPSYMLSSHIESNKQQSSESTSASASNFNEDSWCCVCLSRLKAKDEIRVLPCSHKFHKSCVNRWLKGRHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAGM* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1401 133 CDD mRING-H2-C3H2C2D_ZSWM2 60 102 - -
Gso1g1401 133 SMART ring_2 60 101 IPR001841 -
Gso1g1401 133 Pfam Ring finger domain 60 102 IPR001841 -
Gso1g1401 133 PANTHER TARGET OF ERK KINASE MPK-1 8 118 - -
Gso1g1401 133 SUPERFAMILY RING/U-box 53 106 - -
Gso1g1401 133 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Gso1g1401 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 107 IPR013083 -
Gso1g1401 133 PANTHER GB|AAF27103.1 8 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1401 Gso-Chr1 50664147 50664985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1401 56 106 C3H Transcription Factor Family AT1G80400 50.980 8.06e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1401 - - gmx:100809233 270.396