Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1397 ATGGCTGTCATGGTTGCATTCTTGAATTTGATCATCATCTTTTCAGTAGTCTCTACAACAGGCAAGTCACTGAGCTTAAACTACTATGCAAAAACATGCCCTAATGTGGAGTTCATTGTTGCCAAGGCAGTAAAGGATGCCACTGCTAGGGACAAAACTGTTCCAGCAGCAATTCTGCGAATGCACTTCCATGATTGTTTCGTTCGGGGGTGTGATGCCTCTGTGCTGCTAAATTCAAAAGGAAACAACAAAGCAGAAAAAGACGGGCCACCAAATGTTTCTTTGCATGCATTCTATGTCATTGATGCAGCAAAGAAAGCACTAGAAGCTTCATGCCCTGGTGTGGTCTCTTGTGCTGACATCCTTGCTCTGGCAGCAAGGGACGCAGTTTTTCTGTCAGGAGGACCTACATGGGATGTTCCTAAAGGAAGAAAGGATGGTAGAACATCTAAAGCCAGTGAAACCAGACAATTGCCAGCACCAACCTTCAACTTATCACAACTGCGGCAAAGTTTCTCTCAAAGAGGACTGTCAGGGGAAGACCTGGTAGCTCTGTCAGGGGGGCACACTTTGGGTTTCTCTCACTGCTCATCTTTCAAGAACAGAATCCACAACTTCAATGCAACACATGATGTTGACCCTTCATTAAATCCATCATTTGCAGCAAAACTGATCTCAATTTGTCCACTAAAAAATCAGGCAAAAAATGCAGGCACCTCTATGGACCCTTCAACAACAACTTTTGATAATACATATTACAGGTTGATCCTCCAACAGAAAGGCTTGTTTTCTTCTGATCAAGTTTTGCTTGACAACCCAGACACTAAAAATCTGGTTACAAAGTTTGCCACCTCAAAAAAGGCTTTTTATGAGGCTTTTGCGAAGTCCATGATCAGAATGAGTAGCATCAATGGTGGACAGGAGGTTAGAAAGGACTGCAGAATGATCAATTAA 954 0.4298 MAVMVAFLNLIIIFSVVSTTGKSLSLNYYAKTCPNVEFIVAKAVKDATARDKTVPAAILRMHFHDCFVRGCDASVLLNSKGNNKAEKDGPPNVSLHAFYVIDAAKKALEASCPGVVSCADILALAARDAVFLSGGPTWDVPKGRKDGRTSKASETRQLPAPTFNLSQLRQSFSQRGLSGEDLVALSGGHTLGFSHCSSFKNRIHNFNATHDVDPSLNPSFAAKLISICPLKNQAKNAGTSMDPSTTTFDNTYYRLILQQKGLFSSDQVLLDNPDTKNLVTKFATSKKAFYEAFAKSMIRMSSINGGQEVRKDCRMIN* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1397 317 Gene3D - 27 317 - -
Gso1g1397 317 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 SUPERFAMILY Heme-dependent peroxidases 24 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 CDD secretory_peroxidase 24 314 IPR033905 GO:0004601|GO:0042744
Gso1g1397 317 Gene3D Peroxidase, domain 2 159 300 - -
Gso1g1397 317 ProSiteProfiles Plant heme peroxidase family profile. 23 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PANTHER PEROXIDASE 25-RELATED 7 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Gso1g1397 317 PANTHER PEROXIDASE 7 316 - -
Gso1g1397 317 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gso1g1397 317 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1397 Gso-Chr1 50618901 50620441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1397 10 316 Peroxidase AT5G42180 68.831 8.82e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1397 K00430 - gmx:547873 632.869