Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1395 ATGGATTTTGCGCCGAATCCGTGCCCTTTGCGTTCTTCTTCGTTCGTGAATCTCGTTGAGAGGATTAAACAGCTTGGTACCCTCGCCGTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCCGTTTTCTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTTAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGACAAAATCCCCAAAATAAAAATTACAACTGATAACAATGTTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTATGCTTGGAGAGACAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4521 MDFAPNPCPLRSSSFVNLVERIKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIVSLLSGRLVRERIGPAMFSAVQSQMGAVETSFDEVQNIFDTGGSKGLSGDLVDKIPKIKITTDNNVDASGDRVSCSVCLQDFMLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1395 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 10 232 - -
Gso1g1395 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Gso1g1395 232 CDD RING-H2_PA-TM-RING 187 229 - -
Gso1g1395 232 Pfam Ring finger domain 186 229 IPR001841 -
Gso1g1395 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Gso1g1395 232 SUPERFAMILY RING/U-box 175 232 - -
Gso1g1395 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Gso1g1395 232 SMART ring_2 187 228 IPR001841 -
Gso1g1395 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 232 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1395 Gso-Chr1 50602152 50604611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1395 12 232 C3H Transcription Factor Family AT5G66070 76.018 1.86e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1395 - - gmx:100807641 453.751