Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1388 ATGGCGGACACTGGCGGCGGCGACGACAATGGCGTTACCTATCTCCACGGCGACCTCGATTTGAAAATCATCGAGGCGCGCCACTTGCCCAACATGGACATCTTCTCCGAGCGTCTCCGCCGCTGCGTCACAGCCTGCGACACTATCAAATTCCACTCCGAGGCTCCCGCCGGCGGCGGCGGAGCCGGCCAGCGGAAGCACCACCATCCGAGGATCATCACGAGCGATCCGTACGTCACCGTTTCGGTGCCGCAAGCCACGGTGGCACGCACGCGCGTGCTGAAGAACTCGCCGAACCCTGTGTGGGAGGAACAGTTCAACATCCCGCTCGCGCATCCCGTGGTGGATTTGGAGTTTCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGACCATGGGAACGGTCAAGGTTCCGGCGCGGCGGATTGCCACCGGAGCGAAGATTTCCGAGTGGTTTCCGATTCTGTTGCCGTCCGGGAAGCCGCCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCACTCCGGTGTGGGAGAATTTACTGTACCAGCGAGGCATTGCGGCGGATCCCGAACACAACGGCGTGAGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGTTGTACCAGGACGCGCATTGTACCGAATCTGGTGAAGGGAAGTTACCGGAGATTAAGTTGGAGAATGGAAATGTTTATAGACACGAGAAGTGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTATCATAAGGTGAGGCTCGTTAGAGAGCCTACTAGGCCGTTGCCGCGCGGTGGCGATTTGACGCTTGGTGAGTTGCTTAAGTATAAGTCTGAGGAAGGGGTGAGAGTGTTGTTGCTGGTTTGGGATGATAAAACTTCGCATGATAAGGTTTTCCTCAAGACGGCTGGTGTGATGGGGACTCATGATGAGGAAACCAGGAAGTTTTTTAAGCATTCTTCTGTTATGTGTGTTCTGTCGCCTCGGTATGCCAGCAATAAAATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAACCGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTAATCTTGACGATGTATTTGATGGTGATTTCCACAATCCTACATTTTCTGCTGGAACAAGAGTTCCTAGACAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAACTTTGAGCAGCGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGACGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCTGGTGCTGCTACCTTAAAGGATAAATCGGATGATTATACTGTTCCAGAGGATGACCCTTTAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTGTCCCAGAATCTTATCTGTGCTAAAAATTTGGTTATAGACAAAAGCATTCAAACAGCATACATTCAAGCGATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAATACTTCATTGGATCATCGTATGCATGGCCAGCTTATAAAGATGCAGGGGCTGATAATCTCATCCCAATGGAATTGGCACTGAAAATTGCTAGTAAAATTAGAGCTAAGGAGAGATTTGCTGTCTACATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACGATGCAAATGATGTATGATGCAGTTGCTAGAGAATTGAAATCAATGCAGCTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGATAGTTCAAGCACAAATGGTGCACAGGTCTCAACAGCATATAAATATCGCCGTTTTATGATTTATGTGCATGCTAAAGGGATGATCGTCGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACGTGGTCAGCAAAGAAAAGACATCCACATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAAGAACCAGAGAGATTGGAGTGTGTGCATAAAGTGAATAAAATTGCAGACAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTTTTGCAGGGACATCTTCTTAAGTATCCTGTACAGGTAGATTCCGATGGGAAGATTAGATCCCTACCTGACTGTGAGAATTTCCCCGATGCCGGGGGTAAGATACTGGGGGCTCACTCCACGACAATTCCAGATATCCTAACAACTTAA 2595 0.4671 MADTGGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSEAPAGGGGAGQRKHHHPRIITSDPYVTVSVPQATVARTRVLKNSPNPVWEEQFNIPLAHPVVDLEFRVKDDDVFGAQTMGTVKVPARRIATGAKISEWFPILLPSGKPPKPDTALHVEMKFTPVWENLLYQRGIAADPEHNGVRHTYFPVRKGSSVRLYQDAHCTESGEGKLPEIKLENGNVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVRLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTAGVMGTHDEETRKFFKHSSVMCVLSPRYASNKMSFLKQQVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRNLDDVFDGDFHNPTFSAGTRVPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSGAATLKDKSDDYTVPEDDPLVWVSSEDDPENWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPAYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQGQTMQMMYDAVARELKSMQLTDVHPQDYLNFYCLGNREHFNEDSSSTNGAQVSTAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKKRHPHGQIYGYRMSLWGEHLGMLDETFEEPERLECVHKVNKIADNNWKLFASEDFSLLQGHLLKYPVQVDSDGKIRSLPDCENFPDAGGKILGAHSTTIPDILTT* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1388 864 SMART C2_3c 18 151 IPR000008 -
Gso1g1388 864 PANTHER PHOSPHOLIPASE D DELTA 11 864 - -
Gso1g1388 864 Pfam C2 domain 17 154 IPR000008 -
Gso1g1388 864 PIRSF PLD_plant 6 864 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gso1g1388 864 SUPERFAMILY Phospholipase D/nuclease 199 468 - -
Gso1g1388 864 SUPERFAMILY Phospholipase D/nuclease 560 793 - -
Gso1g1388 864 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 709 736 IPR001736 GO:0003824
Gso1g1388 864 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 177 IPR035892 -
Gso1g1388 864 Pfam Phospholipase D Active site motif 360 395 IPR001736 GO:0003824
Gso1g1388 864 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Gso1g1388 864 Gene3D Endonuclease Chain A 534 761 - -
Gso1g1388 864 PANTHER PHOSPHOLIPASE D 11 864 IPR015679 -
Gso1g1388 864 Pfam Phospholipase D C terminal 783 853 IPR024632 -
Gso1g1388 864 Pfam PLD-like domain 568 746 IPR025202 -
Gso1g1388 864 Gene3D C2 domain 15 182 IPR035892 -
Gso1g1388 864 SMART pld_4 709 736 IPR001736 GO:0003824
Gso1g1388 864 SMART pld_4 360 395 IPR001736 GO:0003824
Gso1g1388 864 Gene3D Endonuclease Chain A 225 479 - -
Gso1g1388 864 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Gso1g1388 864 CDD C2_plant_PLD 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1388 Gso-Chr1 50534646 50542930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1388 12 700 Phospholipase D Gene Family (Wang group) AT4G35790 71.326 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1388 K01115 - gmx:100801787 1796.17