Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1387 ATGGCCGATTCTCCACCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTGAGTCAAGGTCTAGGTCAAGGTCTAGATCTAGGCCTAGGTCTAGGTCCCGGTCAAGATCTTTTGAGAAACAAAGGCCAAGATCCCGGTCGAGAAGTCGTGGAAGATCAAGATCAAGAAGTAACGAAAGGTCTGAGGCTAAAAATGCTGGAACTACACTTTATGTGACTGGCCTGTCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCGTGCTTTCTTGTGGTGGAGCCGCGGACACGAATTTCTCGTGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCGAACCGTTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATTACTGTTGAGCGGTCACGAAGAAAGCGGCCAAGAACTCCTACACCTGGACACTATCTTGGCCTTAAAAGTACTAGAGACTATGGGCATCGTGGTGACCATGGAAGGTATCGAGGAGGTGGATCTGGTCATGATGATTATGGATATCGTGGTGACCGTGGAAGGTCTCCAAGGCACTCACCACCATATCGAGGTGGTAGAGATTATTCACCGAGGCACTCACCCCCACCTTATGGTGGAAGATCTAGGAGGGACAGGTCCAGGTCACTTCCTTATTCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA 741 0.4872 MADSPPRRNSRSPSPWRAESRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNERSEAKNAGTTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGHRGDHGRYRGGGSGHDDYGYRGDRGRSPRHSPPYRGGRDYSPRHSPPPYGGRSRRDRSRSLPYSPYGSPDRRYARGSR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1387 246 SMART rrm1_1 70 143 IPR000504 GO:0003723
Gso1g1387 246 MobiDBLite consensus disorder prediction 144 246 - -
Gso1g1387 246 PANTHER RNA RECOGNITION MOTIF 2 242 - -
Gso1g1387 246 SUPERFAMILY RNA-binding domain, RBD 63 179 IPR035979 GO:0003676
Gso1g1387 246 MobiDBLite consensus disorder prediction 1 70 - -
Gso1g1387 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Gso1g1387 246 MobiDBLite consensus disorder prediction 1 17 - -
Gso1g1387 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Gso1g1387 246 CDD RRM_RBMX_like 68 147 - -
Gso1g1387 246 Gene3D - 8 154 IPR012677 -
Gso1g1387 246 MobiDBLite consensus disorder prediction 163 205 - -
Gso1g1387 246 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1387 Gso-Chr1 50529788 50532809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1387 71 154 Eukaryotic Initiation Factors Gene Family AT1G49760 29.762 5.23e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1387 K12897 - gmx:100527350 313.538