Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1364 ATGGGAGGTGACGCCACTGCCGCCGCTGAGAGTGCGACCGCGGAGTCGAACGCCGCAAATGGAGTCAACATCAACATTCGCTGCTCCAATGGTTCCAAGTTTTCCGTTCAGATTGGCCTTGATTCCACCATCAGATCCTTCAAGGACGCGGTTGCACGCAACTGTGACATATCCGCGGATCAACAGCGCCTGATTTACAAGGGCCGGATTCTCAAGGATGATCAAACCCTCCAAAGCTATGGTTTGGAGGCTGATCACACTGTTCATTTGGTTCGTGGTTTTGCTCCATCTAACACTACTGGTGGAACTAATAGTGTTGGTGGCGGCAATACCACAACTGCTAACACGAGAGGGGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGAGCTTCACTGTTTCCTGGACTTGGTGGTAACAATGGGATGGGGGGCGGTGGTCTCAATGGTCTATTTGGAGCAGGCTTTCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAATGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCTGACATAGTGCGGAATCTTATAATGAATAACCCGCAGATGCAAGAACTAATGGATAGGAACCCCGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGATAGAGCAATGAGCAACATTGAATCTTCTCCTGAAGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCGTTTTTAAATGCCACTACAATGGCTGGTAACACTGGAAATGATGCTGCAGCAGTCAGGAACCAATCCACAAATCCCTCAACTACTAATTCTGAAGCTACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCTTGGTCCTCTACTGGAACTGGAGGAGGCCAGAATAACACCAGAAGGTCAACTACTACTGGTGGGGAAGCTCGACAGTCAACACCCACTGGTCTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGTTGGGTGGGACTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCGATGAACAACTTGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTCGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCGCCGGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAGGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1626 0.4834 MGGDATAAAESATAESNAANGVNINIRCSNGSKFSVQIGLDSTIRSFKDAVARNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTGGTNSVGGGNTTTANTRGAGANEGGGLGGPGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLMRDIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDAAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGGQNNTRRSTTTGGEARQSTPTGLGGLGLPDLEGMLGGTGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1364 541 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Gso1g1364 541 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Gso1g1364 541 CDD Ubl_Dsk2p_like 22 94 - -
Gso1g1364 541 MobiDBLite consensus disorder prediction 96 117 - -
Gso1g1364 541 Gene3D - 197 255 - -
Gso1g1364 541 Gene3D - 8 106 - -
Gso1g1364 541 SMART ubq_7 22 93 IPR000626 GO:0005515
Gso1g1364 541 PANTHER UBIQUILIN 3 541 - -
Gso1g1364 541 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Gso1g1364 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Gso1g1364 541 SMART uba_6 499 537 IPR015940 -
Gso1g1364 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Gso1g1364 541 Gene3D - 481 541 - -
Gso1g1364 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Gso1g1364 541 MobiDBLite consensus disorder prediction 277 353 - -
Gso1g1364 541 SMART CBM 148 189 IPR006636 -
Gso1g1364 541 SMART CBM 202 241 IPR006636 -
Gso1g1364 541 SMART CBM 400 435 IPR006636 -
Gso1g1364 541 SMART CBM 356 397 IPR006636 -
Gso1g1364 541 MobiDBLite consensus disorder prediction 446 464 - -
Gso1g1364 541 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 541 - -
Gso1g1364 541 MobiDBLite consensus disorder prediction 446 466 - -
Gso1g1364 541 CDD UBA_PLICs 499 537 - -
Gso1g1364 541 MobiDBLite consensus disorder prediction 277 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1364 Gso-Chr1 50308795 50315277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1364 22 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.23e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1364 K04523 - gmx:100797539 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1364 1 50308795 50315277 Gso11g0718 11 6408056 6414998 GST
Gso1g1364 1 50308795 50315277 Gso2g0352 2 3857489 3864051 PCT
Gso1g1364 1 50308795 50315277 Gso16g0953 16 26389173 26403352 PCT
Gso2g0352 2 3857489 3864051 Gso1g1364 1 50308795 50315277 PCT
Gso16g0953 16 26389173 26403352 Gso1g1364 1 50308795 50315277 PCT