Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1354 ATGGGAGGCTTATTACACTTTTTTGAATTCAATCAAGGGAGGATGGCCAAGAAAGTCCTTGCTCGTAAGAGACATCATGGTGGCCTGGAAGCTCCTCGCAATAGTCTAGATCTGCAAGTACAAACACCTAAGAACTACTGTCCAGAAGGAAAATTACCATACAATTATCAAGTAGAAGAAAAGGGCAGGTCTGAGAATAACCGCTATTCAAACGTGGGTTCAATGAAAAAACTGATCAATGAGGAGCTATCCAAACAATCAAGCACCAGACAAAATGCGCCAAGCCTTGTGGCAAGGTTGATGGGGATAGATACAATGCCATTAGACACTAAATATGTTGTTCCATCAGACAAAAAAATAAGTGAAAACATGGGGAAGAGGTCATCAGTCAATGGAGTGAATCGAAGGGTTTCAGTTAGTTGGGGTTCTTCCAACTTTAATTCTTCTAGCCAGATGGATTTTGATTCATTATATAAAGACATAGGTGATGAAGATGATGGATGGAACCGGAGTTTTGGAGAACCAAGGCCGCGAGAACATCCTCAGGAAGAGGAACTCCAAAAATTCAAGAAAGAGTTTGAAGCATATCAAGCAGCAAGGTTTCTGGAGTGTTCAAAGGTTGTTGAAATTGGCAGTGCTCCTAGACAATTGCTTGCTCAAGAAAACCTGAACAAGGAAAAGGTGATGCATAATGATTCAGTTTTACAAAGAGCAGCAGCACGGAAACTTGCAGATCTTGACAGCCATTCATTCAAAATGCCACCTGACAGTTATGGTTCAGAATATCATGGTAACATGATGGACCTAATCCCAGCTATGCAAAGGAGAACATTTCCTCCAAGGAGCAGAACACTAAGTAGAGACTTTGAGGAGTCCTTACTGATGAAATCTTGCAACAAATTAGACATGTCTTCTTCTCCCACTAGGATAGTTATCTTGAAGCCTGGTCCTGATAGCATTCGCAACCATGAAGAGAATTGGACTATTTCGTCGGGAACTATACAAGGAAGAAATAGTATAGAAGATTTTCTTGAAGAGGTGAAAGAGCGTTTGAAATGTGAACTGCAAGGTAAAATTGTCAAAAAAGGTTCTGTGGTTCGAGGGAGTGGAATTGAGACACCTTACAATGAAAAGCCATCTGATCCTAAACTAATAGCCCGTCACATAGTAAAGCAAGTCAGAGAAAGTGTGACTAGAGATACTGACACAACTTTACTCCACTCAGAATCAACAGGATCATACAAAAGTGAAATGCAGTTCAATGGACCAAGCTCCCCAGAATTTTTCAGCAGAGATACCAGGAGGTTCTTGTCCAAGAGGCTAAGAAATGTTGTGAGAAGGGAAGCACATGCTGACATTCCTGAGGGAAAATCAATGTCACTTGCATTAGACAACCATAAAGCTAGACTAAAGCCAGCGGAGAATATTAAGAAGTATGCAAGTAACTGGGAAATTTCCAAAGAGGACACATCAATACAAACAGGATCTTTCAGGCATGAACTTGATGAGAATATATTTCTCCACAAGGAGTTATCACCAAGAAACCTTGTAAGATCCTTGTCTGCTCCTGTATCACATTCAGGAACATCATTTGGTAAGCTTCTTCTAGAGGACCGCCATATTTTAACTGGTGCTCAGATTCGGAGGAAGCTTGAAGCTGTTGAAACTATGTCTGTTGATGTCAAGAAACGGAAAAATGATAGATTTAATATTAAAGAAAGAGTCTCCAATTTTAGATATAATCTTGCTTTAAGAGGGAGGCTTTTTGGCAGAAGGGTTCAATCAATGGTAGAATCACATGGTAACGAATTTGGTCCCTTTGTGAGAGATGCCACAAGTGGACCAACAGTTCTCATGAACTGTGGTGAGAGGCATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCTTCTGTGTACAGCAGTGCTCATGAAGACATTTGGAGGCAAACTGAATATTTAAGTCCAATATCAACTCCTGACGTGTCTTCAAGAGACGATAATGTTGTGCCCCAGGTTTTCAGGGATATCAGCTCTGGTTTGAATGAGCTAAGGAGACAACTCAATCAACTTGAATCTGATGGTCTTGAGGACTTGACTATGAAACAGGAGCCTGCTGAGTCTGAATTAGACCAATTAGAGAATCCAGCAGAATCTTACATAAGAGATCTACTTGTTGCTTCTGGTCTGTACTTCGGTTCATGGGATAAATCTTTATTAAGAGGGGACACATTTGCAAAGCCTATTGGCAACTCTGTTTATGAAGAAGTGGAAGAATCTCACAAGAAATTGGTCAAGGAAAATGATGAAAGCTGTATCAAGGATCAGAATGAGAGTAAGCTAGACCACAAAGTTTTGCTTGATTTGTTAAATGAGGCACTTCCAGTTGTTCTTGGACCTCCTTTGACATTGTCTAGATTCAGAAGGAAATTAAGCAACCCTTCCATGTTGCCACCTTCTGGAAAGGAACTGTTGAAGTTAGTGTGGGACATTATCCGTGTTTCTTTTTATCCTCCATCTGACATATCTACTAATTCACTTGATACTTTGGTGGCTCAACACCTAGGATCCATCCCTTGGTCTGGATTAATAAATGATGAGATCAATATTTTGGAAAGAGATATAGAATGTCTAATAACTGATGATCTGGTTGAAGAACTCACAAAGGATATGTTCTAA 2676 0.4032 MGGLLHFFEFNQGRMAKKVLARKRHHGGLEAPRNSLDLQVQTPKNYCPEGKLPYNYQVEEKGRSENNRYSNVGSMKKLINEELSKQSSTRQNAPSLVARLMGIDTMPLDTKYVVPSDKKISENMGKRSSVNGVNRRVSVSWGSSNFNSSSQMDFDSLYKDIGDEDDGWNRSFGEPRPREHPQEEELQKFKKEFEAYQAARFLECSKVVEIGSAPRQLLAQENLNKEKVMHNDSVLQRAAARKLADLDSHSFKMPPDSYGSEYHGNMMDLIPAMQRRTFPPRSRTLSRDFEESLLMKSCNKLDMSSSPTRIVILKPGPDSIRNHEENWTISSGTIQGRNSIEDFLEEVKERLKCELQGKIVKKGSVVRGSGIETPYNEKPSDPKLIARHIVKQVRESVTRDTDTTLLHSESTGSYKSEMQFNGPSSPEFFSRDTRRFLSKRLRNVVRREAHADIPEGKSMSLALDNHKARLKPAENIKKYASNWEISKEDTSIQTGSFRHELDENIFLHKELSPRNLVRSLSAPVSHSGTSFGKLLLEDRHILTGAQIRRKLEAVETMSVDVKKRKNDRFNIKERVSNFRYNLALRGRLFGRRVQSMVESHGNEFGPFVRDATSGPTVLMNCGERHENSTEVPPSPASVYSSAHEDIWRQTEYLSPISTPDVSSRDDNVVPQVFRDISSGLNELRRQLNQLESDGLEDLTMKQEPAESELDQLENPAESYIRDLLVASGLYFGSWDKSLLRGDTFAKPIGNSVYEEVEESHKKLVKENDESCIKDQNESKLDHKVLLDLLNEALPVVLGPPLTLSRFRRKLSNPSMLPPSGKELLKLVWDIIRVSFYPPSDISTNSLDTLVAQHLGSIPWSGLINDEINILERDIECLITDDLVEELTKDMF* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1354 891 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 890 - -
Gso1g1354 891 Pfam DUF761-associated sequence motif 89 107 IPR032795 -
Gso1g1354 891 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 890 - -
Gso1g1354 891 Coils Coil 673 693 - -
Gso1g1354 891 Pfam Domain of unknown function (DUF4378) 718 885 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1354 Gso-Chr1 50190065 50196258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1354 75 890 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 40.376 1.03e-154 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1354 - - gmx:100789616 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1354 1 50190065 50196258 Gso11g0729 11 6513841 6520013 GST
Gso1g1354 1 50190065 50196258 Gso16g0941 16 25891021 25896536 PCT
Gso16g0941 16 25891021 25896536 Gso1g1354 1 50190065 50196258 PCT